S-Lenalidomide

 CAS No.: 202271-91-8  Cat No.: BP-200062 4.5  

S-Lenalidomide is a stereoisomer of lenalidomide and serves as a potent ligand for cereblon (CRBN) E3 ubiquitin ligase in PROTAC drug development. As an E3 Ligase Ligand, S-Lenalidomide facilitates the recruitment of CRBN, enabling targeted protein degradation via the ubiquitin-proteasome system. Frequently used in the design of PROTACs and molecular glues, S-Lenalidomide supports the creation of highly selective bi-functional molecules for the targeted elimination of disease-related proteins. This compound is essential for researchers working on CRBN-mediated protein degradation, offering new avenues for therapeutic discovery in oncology, immunology, and beyond.

S-Lenalidomide

Structure of 202271-91-8

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Ligand for E3 Ligase
Molecular Formula
C13H13N3O3
Molecular Weight
259.26
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* For research and manufacturing use only. Not for human or clinical use.

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IUPACName
(3S)-3-(7-amino-3-oxo-1H-isoindol-2-yl)piperidine-2,6-dione
Synonyms
(S)-3-(4-Amino-1-oxoisoindolin-2-yl)piperidine-2,6-dione; S-(-)-Lenalidomide
InChI Key
GOTYRUGSSMKFNF-JTQLQIEISA-N
InChI
InChI=1S/C13H13N3O3/c14-9-3-1-2-7-8(9)6-16(13(7)19)10-4-5-11(17)15-12(10)18/h1-3,10H,4-6,14H2,(H,15,17,18)/t10-/m0/s1
Canonical SMILES
C1CC(=O)NC(=O)C1N2CC3=C(C2=O)C=CC=C3N

Background Introduction

S-Lenalidomide is the S-enantiomer of lenalidomide, a well-known immunomodulatory imide drug (IMiD) belonging to the thalidomide class. As a derivative with specified stereochemistry, S-Lenalidomide offers distinct pharmacological and chemical properties. This compound acts as a high-affinity Cereblon (CRBN) E3 ligase ligand, frequently used in the research and development of PROTACs (Proteolysis Targeting Chimeras) and molecular glue degraders aimed at targeted protein degradation. Its defined stereochemistry provides advantages in selectivity and functionalization for constructing advanced chemical biology tools and therapeutic candidates.

Mechanism

S-Lenalidomide operates by binding specifically to the CRBN substrate recognition component of the CUL4-CRBN E3 ubiquitin ligase complex. Upon conjugation to a target binding ligand, it forms the E3 ligase recruiting end of a bifunctional PROTAC molecule or molecular glue. This interaction induces the proximity-driven ubiquitination of designated target proteins, promoting their subsequent degradation via the ubiquitin-proteasome pathway. The S-enantiomeric configuration can influence binding affinity and selectivity profiles, making S-Lenalidomide a valuable scaffold for rational degrader design.

Applications

S-Lenalidomide is utilized extensively in the synthesis of CRBN-based PROTACs, molecular glues, and other targeted protein degraders. Its high purity and defined stereochemistry enable reliable structure-activity relationship (SAR) studies and optimization efforts. Key applications include:

• Synthesis of PROTACs employing CRBN E3 ligase recruitment
• Development of novel molecular glue degraders
• Investigation of stereochemistry-driven effects on protein degradation efficacy
• Tool compound for target validation, medicinal chemistry, and chemical biology research
• Custom synthesis for drug discovery pipelines and academic studies focused on targeted protein degradation mechanisms.
• High-purity compound verified by HPLC, NMR, and LC-MS
• Consistent batch-to-batch reproducibility with complete QC documentation
• Supplied with COA, MSDS, and analytical data for traceability
• Reliable global shipping with stability-guaranteed packaging
• Dedicated technical support and optional custom synthesis service
• Demonstrates strong binding affinity to CRBN, VHL, or other E3 ligases
• Enables stable E3 ligase recruitment for targeted protein degradation
• Highly selective ligand for CRBN E3 ligase, enabling targeted protein degradation in PROTAC applications.
• Versatile building block for the development of next-generation PROTACs with enhanced cellular permeability.
1. Lenalidomide, a blockbuster drug for the treatment of multiple myeloma: Semipreparative separation through supercritical fluid chromatography and vibrational circular dichroism spectroscopy
Yilun Yan, Jun Fan, Dong Guo, Yuemei Lin, Yecai Lai, Tai Wang, Hao Gao, Xinsheng Yao, Weiguang Zhang J Sep Sci. 2018 Oct;41(20):3840-3847.doi: 10.1002/jssc.201800519.Epub 2018 Sep 12.
Semipreparative separation of lenalidomide has been performed through supercritical fluid chromatography. In regard to retention and resolution of lenalidomide, effects of chromatographic conditions, such as chiral stationary phases, organic co-solvents, mobile phases, and column temperature, have been studied in detail. Amylose tris(3, 5-dimethylphenylcarbamate)-coated and the single-urea-bound β-cyclodextrin chiral stationary phases exhibited good separation performances for lenalidomide in the CO2 /methanol mixture. Then, a comparative study of semipreparative separation of lenalidomide has been carried out on these two chiral stationary phases. As indicated, separation of lenalidomide on the β-cyclodextrin-bound column was much better than the other. Under the optimized conditions, the loading per injection was 30 mg, the cycle time was 5 min, and the recoveries of two enantiomers were about 81.7 and 79.5%, respectively. Moreover, the vibrational circular dichroism spectrum of the first-eluted enantiomer in d6 -dimethylsulfoxide solution was consistent with the calculated pattern based on the S configuration, revealing that it should be (S)-(-)-lenalidomide. Briefly, this separation method through supercritical fluid chromatography might provide favorable information for rapid separation, enantioselective assessment, and absolute configurations of chiral pharmaceuticals.
2. Single-dose pharmacokinetics of lenalidomide in healthy volunteers: dose proportionality, food effect, and racial sensitivity
N Chen, C Kasserra, J Reyes, L Liu, H Lau Clinical TrialCancer Chemother Pharmacol. 2012 Nov;70(5):717-25.doi: 10.1007/s00280-012-1966-z.Epub 2012 Sep 6.
Purpose:Lenalidomide is an immunomodulatory drug with efficacy in various hematological malignancies. The purpose of these studies was to evaluate the single-dose pharmacokinetics of lenalidomide, including dose proportionality, food effect, and racial sensitivity. Methods:Three studies were conducted including a total of 58 healthy subjects: a randomized, single-blind, alternating group, single-ascending dose study; a randomized, two-way crossover food effect study; and a randomized, double-blind, two-group, within-subject, single-ascending dose study. Results:Oral absorption of lenalidomide was rapid and the maximum plasma concentration (C (max)) was observed approximately 1 h post-dose. Co-administration with a high-fat meal reduced the area under the concentration-time curve (AUC) and C (max) by approximately 20 and 50 %, respectively, and delayed time to C (max) (t (max)) by 1.63 h. However, phase III trials were dosed without regard to food; therefore, clinical relevance of the food effect was minimal. The terminal elimination half-life (t (½)) was 3-4 h at doses up to 50 mg and was not affected by food. The AUC and C (max) were proportional to lenalidomide single doses (5-400 mg), and total and renal clearance were dose-independent. The R- to S-lenalidomide ratio in plasma was stable over time, approximately 45-55 % of total drug. There were no differences in pharmacokinetic parameters, dose-exposure relationship, or enantiomeric ratio, between Japanese and Caucasian subjects.Conclusion:Lenalidomide displayed linear pharmacokinetics from doses 5-400 mg in healthy subjects. Although food reduced bioavailability, this was not considered clinically relevant. Lenalidomide was generally well tolerated in both ethnic groups.

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