3,6,9,12-Tetraoxatetradecane-1,14-dioic acid

 CAS No.: 32775-08-9  Cat No.: BP-500845  Purity: ≥95% 4.5  

3,6,9,12-Tetraoxatetradecane-1,14-dioic acid is a PEG-like, ether-rich bifunctional linker featuring four internal oxygen atoms that confer conformational flexibility and improved aqueous solubility, together with two terminal carboxylic acid groups for orthogonal conjugation. Its extended chain length and multiple ether sites help reduce steric congestion between the two PROTAC-relevant ends, while the terminal acids enable formation of activated ester, amide, or other coupling derivatives commonly used to connect an E3 ligase ligand and a target-binding moiety. In targeted protein degradation designs, this linker serves as a spacer that tunes the effective distance and relative orientation required for productive ternary complex formation, thereby influencing degradation potency and selectivity. Researchers value this scaffold for systematic linker optimization, particularly when solubility and linker dynamics are limiting factors in PROTAC synthesis and performance.

3,6,9,12-Tetraoxatetradecane-1,14-dioic acid

Structure of 32775-08-9

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Category
PROTAC Linker
Molecular Formula
C10H18O8
Molecular Weight
266.25
Appearance
Liquid

* For research and manufacturing use only. Not for human or clinical use.

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Purity
≥95%
Appearance
Liquid
Storage
Store at 2-8°C
Shipping
Room temperature in continental US; may vary elsewhere.
IUPACName
2-[2-[2-[2-(carboxymethoxy)ethoxy]ethoxy]ethoxy]acetic acid
Synonyms
CH2COOH-PEG3-CH2COOH; 3,6,9,12-Tetraoxatetradecanedioic acid; COOH-CH2-PEG4-CH2-COOH; COOH-CH2-PEG3-CH2-COOH
Boiling Point
468.0±35.0 °C at 760 mmHg
Density
1.278±0.06 g/cm3 (Predicted)
InChI Key
BEAPHLNTCMLNPR-UHFFFAOYSA-N
InChI
InChI=1S/C10H18O8/c11-9(12)7-17-5-3-15-1-2-16-4-6-18-8-10(13)14/h1-8H2,(H,11,12)(H,13,14)
SMILES
C(COCCOCC(=O)O)OCCOCC(=O)O
1. Extracellular application of the N-methyl-D-aspartate receptor allosteric modulator rapastinel acts remotely to regulate Ca2+ inactivation at an intracellular locus
Xiao-Lei Zhang, Nils A Berglund, Jeffrey S Burgdorf, John E Donello, Joseph R Moskal, Patric K Stanton Neuroreport. 2022 May 4;33(7):312-319.doi: 10.1097/WNR.0000000000001787.Epub 2022 Apr 8.
Background:A novel N-methyl-D-aspartate receptor (NMDAR) allosteric modulator, rapastinel (RAP, formerly GLYX-13), elicits long-lasting antidepressant-like effects by enhancing long-term potentiation (LTP) of synaptic transmission. RAP elicits these effects by binding to a unique site in the extracellular region of the NMDAR complex, transiently enhancing NMDAR-gated current in pyramidal neurons of both hippocampus and medial prefrontal cortex.
2. Phytochemical investigation and cytotoxic evaluation of the components of the medicinal plant Ligularia atroviolacea
Xiaoyu Wang, Lianli Sun, Kexin Huang, Shuyun Shi, Lijuan Zhang, Juanhua Xu, Hua Peng, Xianfeng Sun, Liwei Wang, Xiumei Wu, Yu Zhao, Xiaokun Li, Joachim Stöckigt, Jia Qu Chem Biodivers. 2009 Jul;6(7):1053-65.doi: 10.1002/cbdv.200800128.
A phytochemical investigation of the roots of Ligularia atroviolacea resulted in the isolation of 24 compounds including seven new eremophilanoids named eremophila-3,7(11),8-triene-12,8;14,6alpha-diolide (1), 3beta-(angeloyloxy)eremophil-7(11)-en-12,8beta-olid-14-oic acid (2), 1alpha-chloro-10beta-hydroxy-6beta-(2-methylpropanoyloxy)-9-oxo-7,8-furoeremophilane (3), (10betaH)-8-oxoeremophila-3(4),6(7)-diene-12,14-dioic acid (4), (10alphaH)-8-oxoeremophila-3(4),6(7)-diene-12,14-dioic acid (5), 8beta-[eremophila-3',7'(11')-diene-12',8'alpha;14',6'alpha-diolide]eremophila-3,7(11)-diene-12,8alpha;14,6alpha-diolide (6), and ligulatrovine A (7), eleven known eremophilanoids, 8-18, four steroids, one glucose derivative, and one fatty acid. The structures of these compounds were elucidated by spectroscopic methods including 2D-NMR experiments. The structure of 3 was also established by an X-ray diffraction study. The in vitro cytotoxicity evaluation of selected compounds was performed on seven cultured tumor cell lines, i.e., KB, BEL-7404, A549, HL-60, HeLa, CNE, and P-388D1. The preliminary taxonomy of this species was also discussed, and the possible biogenesis of a dimer possessing a new noreremophilanoid type skeleton, 7, is presented in a preliminary form.

3,6,9,12-Tetraoxatetradecane-1,14-dioic acid, provides a chemically robust, poly(ethylene glycol)-like spacer featuring terminal carboxylic acid handles for reliable conjugation. Its ether-rich backbone supports solubility and conformational flexibility, which can improve productive ternary complex formation in targeted protein degradation workflows. The linker is well suited for constructing degraders through standard amide or ester-forming coupling strategies; detailed structural and reactivity considerations are provided below.

Structure: The linker contains a linear ether-rich scaffold with multiple oxygen atoms and two terminal carboxylic acid functional groups. It features stable C–O ether linkages and carboxyl groups capable of forming amide bonds. The flexible polyether character supports favorable hydrophilicity and conformational adaptability.

Reactivity: The carboxylic acids enable PROTAC synthesis via activation and coupling to amine-containing ligands, typically through carboxylate activation using peptide-coupling reagents. Reaction conditions are commonly chosen to preserve sensitive functional groups and to drive amide-bond formation, often in polar aprotic solvents with base. Mechanistically, activation forms an acyl intermediate that is attacked by the nucleophilic amine to yield stable conjugates.

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