3,6,9,12-Tetraoxatetradecane-1,14-dioic acid is a PEG-like, ether-rich bifunctional linker featuring four internal oxygen atoms that confer conformational flexibility and improved aqueous solubility, together with two terminal carboxylic acid groups for orthogonal conjugation. Its extended chain length and multiple ether sites help reduce steric congestion between the two PROTAC-relevant ends, while the terminal acids enable formation of activated ester, amide, or other coupling derivatives commonly used to connect an E3 ligase ligand and a target-binding moiety. In targeted protein degradation designs, this linker serves as a spacer that tunes the effective distance and relative orientation required for productive ternary complex formation, thereby influencing degradation potency and selectivity. Researchers value this scaffold for systematic linker optimization, particularly when solubility and linker dynamics are limiting factors in PROTAC synthesis and performance.
Structure of 32775-08-9
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3,6,9,12-Tetraoxatetradecane-1,14-dioic acid, provides a chemically robust, poly(ethylene glycol)-like spacer featuring terminal carboxylic acid handles for reliable conjugation. Its ether-rich backbone supports solubility and conformational flexibility, which can improve productive ternary complex formation in targeted protein degradation workflows. The linker is well suited for constructing degraders through standard amide or ester-forming coupling strategies; detailed structural and reactivity considerations are provided below.
Structure: The linker contains a linear ether-rich scaffold with multiple oxygen atoms and two terminal carboxylic acid functional groups. It features stable C–O ether linkages and carboxyl groups capable of forming amide bonds. The flexible polyether character supports favorable hydrophilicity and conformational adaptability.
Reactivity: The carboxylic acids enable PROTAC synthesis via activation and coupling to amine-containing ligands, typically through carboxylate activation using peptide-coupling reagents. Reaction conditions are commonly chosen to preserve sensitive functional groups and to drive amide-bond formation, often in polar aprotic solvents with base. Mechanistically, activation forms an acyl intermediate that is attacked by the nucleophilic amine to yield stable conjugates.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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