Methyl acetate-PEG1-methyl acetate is a short, difunctional PEG-based linker featuring two ester-terminated methyl acetate groups connected through a single ethylene glycol unit, providing a flexible hydrophilic segment between two acyl functionalities. In PROTAC and targeted protein degradation constructs, such linkers are used to tune the spatial relationship and effective orientation between the ligand moieties that recruit an E3 ligase and the ligand that binds the target protein. The ester termini can participate in synthetic conjugation strategies (for example, via controlled acylation or subsequent derivatization) to connect the linker to complementary functional groups on the two binding partners, while the brief PEG segment helps mitigate steric constraints and can improve solubility and conformational adaptability of the assembled degrader. This linker is valuable for rapid PROTAC optimization where minimal linker length is desired to preserve binding geometry, yet hydrophilicity and flexibility are needed to support productive ternary complex formation.
Structure of 54665-51-9
* For research and manufacturing use only. Not for human or clinical use.
| Size | Price | Stock | Quantity |
|---|---|---|---|
| -- | $-- | In stock |
Looking for different specifications? Click to request a custom quote!
Capabilities & Facilities
Popular Publications Citing BOC Sciences Products
Methyl acetate-PEG1-methyl acetate, is designed to provide a compact polyethylene glycol–based spacer flanked by ester functionalities, enabling efficient conjugation between ligand-bearing fragments. Its ether-rich segment can enhance solubility and conformational flexibility while maintaining a defined attachment geometry for targeted protein degradation workflows. The following sections describe its structure-related features and practical reactivity considerations for PROTAC assembly in detail below.
Structure: The linker contains a short PEG-derived ether segment connected through ester linkages to methyl acetate termini. Its structure features ester carbonyls and ether oxygen atoms, providing a polar, hydrogen-bond-accepting scaffold. Overall, it is expected to show moderate polarity and good compatibility with common organic synthesis conditions used for PROTAC construction.
Reactivity: Ester-terminated linkers are typically engaged via nucleophilic acyl substitution or transesterification-type strategies to form new ester or related conjugation bonds under controlled conditions. Suitable approaches often employ mild base or nucleophile activation, with solvents such as polar aprotic media or alcohol-containing systems depending on the coupling partner. Mechanistically, acyl substitution proceeds through a tetrahedral intermediate, enabling stepwise assembly of PROTAC intermediates prior to final purification.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
Please contact us with any specific requirements and we will get back to you as soon as possible.