N-Boc-1,6-hexanediamine is a protected aliphatic diamine featuring a six-carbon chain and a Boc (tert-butyloxycarbonyl) group on one terminal nitrogen, providing a stable, orthogonally protected handle for stepwise synthesis. In PROTAC linker construction, this scaffold supplies a flexible, hydrophobic spacer that can tune the effective distance and relative orientation between a target-binding ligand and an E3 ligase ligand, while the Boc protection enables selective functionalization (e.g., conversion of the free amine to amide or carbamate linkages) without simultaneously modifying the protected site. Its diamine functionality supports iterative coupling strategies to generate amide-linked or urea/carbamate-linked conjugates commonly used to connect warheads and ligase recruiters. As a modular building block, it is valuable for rapid structure–activity optimization in targeted protein degradation research, where linker length, flexibility, and attachment chemistry strongly influence ternary complex formation and degradation potency.
Structure of 51857-17-1
* For research and manufacturing use only. Not for human or clinical use.
| Size | Price | Stock | Quantity |
|---|---|---|---|
| -- | $-- | In stock |
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| ConcentrationVolumeMass | 1 mg | 5 mg | 10 mg |
|---|---|---|---|
| 1 mM | 4.6228 mL | 23.1139 mL | 46.2278 mL |
| 5 mM | 0.9246 mL | 4.6228 mL | 9.2456 mL |
| 10 mM | 0.4623 mL | 2.3114 mL | 4.6228 mL |
N-Boc-1,6-hexanediamine, provides a protected diamine handle that is well suited for modular assembly of bifunctional degraders. Its flexible aliphatic backbone supports productive spatial presentation of recognition and E3-ligase-binding motifs, while the Boc group offers controlled chemoselectivity during stepwise synthesis. The protected amine enables reliable coupling strategies used to build PROTACs, with subsequent deprotection and functional group installation described in detail below.
Structure: N-Boc-1,6-hexanediamine contains a flexible six-carbon aliphatic chain bearing two primary amine functionalities, one protected as a tert-butoxycarbonyl (Boc) carbamate. The molecule features amide-like carbamate bonding, multiple hydrogen-bonding sites, and basic nitrogen centers, supporting solubility and predictable derivatization chemistry.
Reactivity: For PROTAC construction, the Boc-protected amine can be selectively deprotected under standard acid-mediated conditions to generate a free primary amine for subsequent amide or urea-forming couplings. Typical strategies include nucleophilic acyl substitution with activated carboxylic acids or activated esters, often using coupling reagents and inert organic solvents. The unprotected amine can participate in orthogonal functionalization, enabling sequential linker installation and controlled PROTAC assembly.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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