PC Azido-PEG11-NHS carbonate ester
PC Azido-PEG11-NHS carbonate ester is a heterobifunctional, PEG-based linker designed for PROTAC and targeted protein degradation workflows, combining an azide handle for bioorthogonal conjugation with an NHS carbonate ester for rapid coupling to primary amines on ligands such as lysine-containing peptides or amine-functionalized small-molecule warheads. The extended PEG chain provides a flexible, hydrophilic spacer that can reduce steric interference and help maintain productive geometry between the two binding moieties required for ternary complex formation. In PROTAC construction, the NHS carbonate group enables efficient attachment to an amine-bearing component, while the terminal azide can be used for subsequent click chemistry (e.g., strain-promoted azide–alkyne cycloaddition) to install the complementary partner. This linker is valuable for modular synthesis, enabling systematic optimization of linker length and attachment chemistry to improve degradation potency and selectivity in cellular assays.
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* For research and manufacturing use only. Not for human or clinical use.
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PC Azido-PEG11-NHS carbonate ester is a PEG-based heterobifunctional linker designed for PROTAC construction, enabling efficient conjugation of targeting ligands through NHS-activated carbonate chemistry while retaining an azide handle for orthogonal “click” functionalization. Its flexible polyethylene glycol scaffold helps tune linker length and solubility, supporting productive ternary complex formation. The detailed structural and reactivity considerations for experimental assembly are provided below.
Structure: The molecule contains a polyethylene glycol chain terminating in an azide group and an NHS carbonate ester electrophile. It features an activated carbonate linkage suitable for acyl substitution and an azide for bioorthogonal cycloaddition. The PEG segment provides conformational flexibility and improved aqueous compatibility.
Reactivity: The NHS carbonate ester reacts with primary amines under mild base conditions to form a stable carbamate linkage, typically using polar aprotic solvents compatible with amine coupling. The azide enables copper-catalyzed or strain-promoted azide–alkyne cycloaddition, allowing modular installation of the second PROTAC component. Reaction design should consider preserving ligand integrity and minimizing side reactions during sequential conjugation.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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