Boc-6-Aminohexanoic acid

 CAS No.: 6404-29-1  Cat No.: BP-501126  Purity: ≥ 99% (HPLC) 4.5  

Boc-6-Aminohexanoic acid is an N-Boc-protected, six-carbon amino acid building block featuring a terminal primary amine and a carboxylic acid functionality, providing a flexible aliphatic spacer suitable for stepwise conjugation chemistry. In PROTAC linker design, such aminohexanoic acid units are widely used to tune the effective distance and relative orientation between the ligand that recruits an E3 ligase and the ligand that binds the target protein. The Boc protecting group enables controlled amide bond formation under standard peptide-coupling conditions, allowing researchers to assemble linkers by sequential deprotection and coupling to generate stable amide-linked architectures. Its extended chain length and conformational flexibility can help optimize ternary complex formation and thereby influence degradation potency and selectivity in targeted protein degradation assays. As a versatile, reproducible intermediate, it supports systematic linker optimization and facilitates the synthesis of diverse PROTAC scaffolds for mechanistic and structure–activity relationship studies.

Boc-6-Aminohexanoic acid

Structure of 6404-29-1

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PROTAC Linker
Molecular Formula
C11H21NO4
Molecular Weight
231.29
Appearance
White to off-white powder

* For research and manufacturing use only. Not for human or clinical use.

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Popular Publications Citing BOC Sciences Products
Purity
≥ 99% (HPLC)
Appearance
White to off-white powder
Storage
Store at 2-8 °C
Shipping
Room temperature in continental US; may vary elsewhere.
IUPACName
6-[(2-methylpropan-2-yl)oxycarbonylamino]hexanoic acid
Synonyms
Boc-ε-Acp-OH; Boc-ε-Ahx-OH; Boc ε Acp OH; Boc ε Ahx OH
Boiling Point
380.3°C at 760 mmHg
Melting Point
35-40 °C
Density
1.065 g/cm3
InChI Key
RUFDYIJGNPVTAY-UHFFFAOYSA-N
InChI
InChI=1S/C11H21NO4/c1-11(2,3)16-10(15)12-8-6-4-5-7-9(13)14/h4-8H2,1-3H3,(H,12,15)(H,13,14)
SMILES
CC(C)(C)OC(=O)NCCCCCC(=O)O
1. Efficient acid-catalyzed (18) F/(19) F fluoride exchange of BODIPY dyes
Edmund J Keliher, Jenna A Klubnick, Thomas Reiner, Ralph Mazitschek, Ralph Weissleder ChemMedChem. 2014 Jul;9(7):1368-73. doi: 10.1002/cmdc.201300506. Epub 2014 Mar 5.
Fluorine-containing fluorochromes are important validation agents for positron emission tomography imaging compounds, as they can be readily validated in cells by fluorescence imaging. In particular, the (18) F-labeled BODIPY-FL fluorophore has emerged as an important platform, but little is known about alternative (18) F-labeling strategies or labeling on red-shifted fluorophores. In this study we explore acid-catalyzed (18) F/(19) F exchange on a range of commercially available N-hydroxysuccinimidyl ester and maleimide BODIPY fluorophores. We show this method to be a simple and efficient (18) F-labeling strategy for a diverse span of fluorescent compounds, including a BODIPY-modified PARP-1 inhibitor, and amine- and thiol-reactive BODIPY fluorophores.
2. Development of l-Amino-Acid-Based Hydroxyl Functionalized Biodegradable Amphiphilic Polyesters and Their Drug Delivery Capabilities to Cancer Cells
Sonashree Saxena, Manickam Jayakannan Biomacromolecules. 2020 Jan 13;21(1):171-187. doi: 10.1021/acs.biomac.9b01124. Epub 2019 Oct 22.
Hydroxyl-functionalized amphiphilic polyesters based on l-amino acid bioresources were designed and developed, and their nanoassemblies were explored as intracellular enzyme-biodegradable scaffolds for delivering anticancer drugs and fluorophores to cancer cells. To accomplish this task, acetal-masked multifunctional dicarboxylic ester monomer from l-aspartic acid was tailor-made, and it was subjected to solvent-free melt transesterification polycondensation with commercial diols to produce acetal-functionalized polyesters. Acid-catalyzed postpolymerization deprotection of these acetal-polyesters produced amphiphilic hydroxyl-functionalized polyesters. The amphiphilic polyesters were self-assembled in aqueous medium to produce nanoparticles of size <200 nm. Wide ranges of both water-soluble and water-insoluble anticancer drugs such as doxorubicin (DOX), camptothecin (CPT), and curcumin (CUR) and fluorophores such as Nile red (NR), Rose Bengal (RB), and Congo red (CR) were encapsulated in hydroxyl polyesters nanoparticles. In vitro drug release studies revealed that the aliphatic polyester backbone underwent lysosomal enzymatic-biodegradation to release the loaded cargoes at the intracellular compartments. Lysotracker-assisted live-cell confocal microscopy studies further confirmed the colocalization of the polymer nanoscaffolds in the lysosomes and supported their enzymatic-biodegradation for drug delivery. In vitro cytotoxicity studies showed that the nascent polymers were not toxic, whereas their anticancer drug-loaded nanoparticles exhibited excellent cell killing in cervical cancer (HeLa) cell lines. The drug-loaded (CPT, CUR, and DOX) and the fluorophore-loaded (NR, RB, and CR) polymer nanoparticles were highly luminescent; thus, the encapsulated polymer nanoparticles enabled the multiple color-tunable bioimaging in cancer cells in the entire visible region from blue to deep red. Time-dependent live-cell confocal microscopy studies established that the cellular uptake of drugs and fluorophores was 5 to 10-fold higher while they were delivered from the hydroxyl polyester platform. The hydroxyl polyester nanocarrier design strategy opens up new opportunities in drug delivery to cancer cells from a biodegradable polymer platform based on l-amino acids.
3. Aliphatic hyperbranched polyester: a new building block in the construction of multifunctional nanoparticles and nanocomposites
Santimukul Santra, Charalambos Kaittanis, J Manuel Perez Langmuir. 2010 Apr 20;26(8):5364-73. doi: 10.1021/la9037843.
Herein we report the design and synthesis of multifunctional hyperbranched polyester-based nanoparticles and nanocomposites with properties ranging from magnetic, fluorescence, antioxidant and X-ray contrast. The fabrication of these nanostructures was achieved using a novel aliphatic and biodegradable hyperbranched polyester (HBPE) synthesized from readily available diethyl malonate. The polymer's globular structure with functional surface carboxylic groups and hydrophobic cavities residing in the polymer's interior allows for the formation of multifunctional polymeric nanoparticles, which are able to encapsulate a diversity of hydrophobic cargos. Via simple surface chemistry modifications, the surface carboxylic acid groups were modified to yield nanoparticles with a variety of surface functionalizations, such as amino, azide and propargyl groups, which mediated the conjugation of small molecules. This capability achieved the engineering of the HBPE nanoparticle surface for specific cell internalization studies and the formation of nanoparticle assemblies for the creation of novel nanocomposites that retained, and in some cases enhanced, the properties of the parental nanoparticle building blocks. Considering these results, the HBPE polymer, nanoparticles and composites should be ideal for biomedical, pharmaceutical, nanophotonics applications.

Boc-6-Aminohexanoic acid, provides a protected six-carbon amino acid motif suitable for constructing flexible, amide-bearing connections between targeting ligands and E3-recruiting warheads. Its Boc-protected amine enables controlled functionalization under standard organic synthesis workflows, supporting modular PROTAC assembly and optimization of linker length and attachment chemistry. The following sections describe its structure and practical reactivity considerations in detail.

Structure: Boc-6-Aminohexanoic acid contains a Boc-protected primary amine and a carboxylic acid on a linear aliphatic chain. It features carbamate protection, a terminal carboxylic acid, and typical C–C and C–N single bonds, enabling formation of amide linkages after activation of the acid or deprotection of the amine.

Reactivity: The carboxylic acid is commonly converted to activated derivatives (such as acid chlorides, activated esters, or coupling-ready intermediates) to enable amide bond formation with amine-containing partners. The Boc group can be removed under acid-mediated conditions to reveal the free amine for subsequent coupling. Standard peptide-coupling strategies and nucleophilic acyl substitution principles govern PROTAC assembly, typically using inert atmospheres, appropriate bases, and dry organic solvents.

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Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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