Boc-6-Aminohexanoic acid
Boc-6-Aminohexanoic acid is an N-Boc-protected, six-carbon amino acid building block featuring a terminal primary amine and a carboxylic acid functionality, providing a flexible aliphatic spacer suitable for stepwise conjugation chemistry. In PROTAC linker design, such aminohexanoic acid units are widely used to tune the effective distance and relative orientation between the ligand that recruits an E3 ligase and the ligand that binds the target protein. The Boc protecting group enables controlled amide bond formation under standard peptide-coupling conditions, allowing researchers to assemble linkers by sequential deprotection and coupling to generate stable amide-linked architectures. Its extended chain length and conformational flexibility can help optimize ternary complex formation and thereby influence degradation potency and selectivity in targeted protein degradation assays. As a versatile, reproducible intermediate, it supports systematic linker optimization and facilitates the synthesis of diverse PROTAC scaffolds for mechanistic and structure–activity relationship studies.
Structure of 6404-29-1
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Boc-6-Aminohexanoic acid, provides a protected six-carbon amino acid motif suitable for constructing flexible, amide-bearing connections between targeting ligands and E3-recruiting warheads. Its Boc-protected amine enables controlled functionalization under standard organic synthesis workflows, supporting modular PROTAC assembly and optimization of linker length and attachment chemistry. The following sections describe its structure and practical reactivity considerations in detail.
Structure: Boc-6-Aminohexanoic acid contains a Boc-protected primary amine and a carboxylic acid on a linear aliphatic chain. It features carbamate protection, a terminal carboxylic acid, and typical C–C and C–N single bonds, enabling formation of amide linkages after activation of the acid or deprotection of the amine.
Reactivity: The carboxylic acid is commonly converted to activated derivatives (such as acid chlorides, activated esters, or coupling-ready intermediates) to enable amide bond formation with amine-containing partners. The Boc group can be removed under acid-mediated conditions to reveal the free amine for subsequent coupling. Standard peptide-coupling strategies and nucleophilic acyl substitution principles govern PROTAC assembly, typically using inert atmospheres, appropriate bases, and dry organic solvents.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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