FKBP12 PROTAC dTAG-13

 CAS No.: 2064175-41-1  Cat No.: BP-400077  Purity: ≥95% 4.5  

FKBP12 PROTAC dTAG-13 is a cereblon-recruiting heterobifunctional degrader used in the dTAG system for selective degradation of proteins fused to FKBP12F36V. Public sources describe it as an ortho-substituted degrader that effectively engages FKBP12F36V and cereblon to enable rapid and selective degradation of FKBP12F36V-tagged proteins. The FKBP12F36V-binding element recognizes the engineered tag, while the cereblon ligand recruits CRL4-cereblon; the linker connects the two functions for productive ternary-complex formation. Mechanistically, dTAG-13 induces ubiquitination and proteasome-dependent depletion of the tagged protein of interest rather than relying on an endogenous ligand for the target itself. It is useful for target validation, acute protein-function studies, degradation kinetics, essential protein research, and modular chemical-genetic experiments where controlled degradation is required.

FKBP12 PROTAC dTAG-13

Structure of 2064175-41-1

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Category
PROTAC
Molecular Formula
C57H68N4O15
Molecular Weight
1049.17
Appearance
White Solid

* For research and manufacturing use only. Not for human or clinical use.

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Purity
≥95%
Solubility
Soluble in DMSO, Ethanol
Appearance
White Solid
Storage
Store at -20°C
Shipping
Room temperature in continental US; may vary elsewhere.
IUPACName
[(1R)-3-(3,4-dimethoxyphenyl)-1-[2-[2-[6-[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]oxyhexylamino]-2-oxoethoxy]phenyl]propyl] (2S)-1-[(2S)-2-(3,4,5-trimethoxyphenyl)butanoyl]piperidine-2-carboxylate
Synonyms
(1R)-3-(3,4-Dimethoxyphenyl)-1-(2-(2-((6-((2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindolin-4-yl)oxy)hexyl)amino)-2-oxoethoxy)phenyl)propyl (2S)-1-((S)-2-(3,4,5-trimethoxyphenyl)butanoyl)piperidine-2-carboxylate; 2-Piperidinecarboxylic acid, 1-[(2S)-1-oxo-2-(3,4,5-trimethoxyphenyl)butyl]-, (1R)-3-(3,4-dimethoxyphenyl)-1-[2-[2-[[6-[[2-(2,6-dioxo-3-piperidinyl)-2,3-dihydro-1,3-dioxo-1H-isoindol-4-yl]oxy]hexyl]amino]-2-oxoethoxy]phenyl]propyl ester, (2S)-; (1R)-3-(3,4-Dimethoxyphenyl)-1-[2-[2-[[6-[[2-(2,6-dioxo-3-piperidinyl)-2,3-dihydro-1,3-dioxo-1H-isoindol-4-yl]oxy]hexyl]amino]-2-oxoethoxy]phenyl]propyl (2S)-1-[(2S)-1-oxo-2-(3,4,5-trimethoxyphenyl)butyl]-2-piperidinecarboxylate; dTAG-13
Boiling Point
1134.0±65.0°C at 760 Torr
Density
1.260±0.06 g/cm3
InChI Key
BJFBRLAWLPZOMJ-QHVFGHLPSA-N
InChI
InChI=1S/C57H68N4O15/c1-7-37(36-32-47(71-4)52(73-6)48(33-36)72-5)54(65)60-29-14-12-19-41(60)57(68)76-43(25-22-35-23-26-44(69-2)46(31-35)70-3)38-17-10-11-20-42(38)75-34-50(63)58-28-13-8-9-15-30-74-45-21-16-18-39-51(45)56(67)61(55(39)66)40-24-27-49(62)59-53(40)64/h10-11,16-18,20-21,23,26,31-33,37,40-41,43H,7-9,12-15,19,22,24-25,27-30,34H2,1-6H3,(H,58,63)(H,59,62,64)/t37-,40?,41-,43+/m0/s1
SMILES
O=C(OC(C=1C=CC=CC1OCC(=O)NCCCCCCOC2=CC=CC=3C(=O)N(C(=O)C23)C4C(=O)NC(=O)CC4)CCC5=CC=C(OC)C(OC)=C5)C6N(C(=O)C(C7=CC(OC)=C(OC)C(OC)=C7)CC)CCCC6
Pub Chem ID
124187630
Mechanism

Target: dTAG-13 selectively targets FKBP12F36V fusion proteins for CRBN-mediated degradation.

Binding site: Its bumped FKBP ligand binds the engineered FKBP12F36V binding pocket.

Mechanism of action: FKBP12 PROTAC dTAG-13 is a CRBN-recruiting heterobifunctional degrader used in the dTAG system for rapid depletion of proteins fused to FKBP12F36V. The compound simultaneously engages the engineered FKBP12F36V tag and CRL4CRBN ubiquitin ligase machinery, inducing ubiquitination and proteasome-dependent degradation of the tagged protein of interest while sparing wild-type FKBP12. This tool is valuable for target validation, time-resolved functional studies, acute loss-of-protein experiments, and evaluation of immediate signaling or phenotypic consequences after selective degradation of genetically tagged targets.

Applications

• PROTAC-Mediated FKBP12 Degradation: FKBP12 PROTAC dTAG-13 is designed to facilitate the selective degradation of the FKBP12 protein through the ubiquitin-proteasome system. This application is crucial for studying protein function and interactions by enabling researchers to observe cellular consequences following targeted protein depletion.

• Targeted Protein Degradation in Signal Transduction: By employing FKBP12 PROTAC dTAG-13, researchers can investigate the role of FKBP12 in intracellular signaling pathways. This approach allows for precise modulation of protein levels, providing insights into the mechanistic underpinnings of signal transduction processes.

• Functional Genomics via PROTAC: Utilizing FKBP12 PROTAC dTAG-13, scientists can perform functional genomics studies by systematically degrading FKBP12, thereby elucidating its contribution to various cellular phenotypes. This application aids in identifying potential therapeutic targets by revealing the biological roles of specific proteins.

• PROTAC-Enabled Drug Discovery: FKBP12 PROTAC dTAG-13 serves as a powerful tool in drug discovery research, allowing for the examination of FKBP12 as a potential target. By observing the effects of its degradation, researchers can assess the viability of targeting this protein in therapeutic strategies.

1. The dTAG system for immediate and target-specific protein degradation.
Nabet, B., Roberts, J.M., Buckley, D.L., Paulk, J., Dastjerdi, S., Yang, A., Leggett, A.L., Erb, M.A., Lawlor, M.A., Souza, A. and Scott, T.G., 2018. Nature chemical biology, 14(5), pp.431-441.
Dissection of complex biological systems requires target-specific control of the function or abundance of proteins. Genetic perturbations are limited by off-target effects, multicomponent complexity, and irreversibility. Most limiting is the requisite delay between modulation to experimental measurement. To enable the immediate and selective control of single protein abundance, we created a chemical biology system that leverages the potency of cell-permeable heterobifunctional degraders. The dTAG system pairs a novel degrader of FKBP12F36V with expression of FKBP12F36V in-frame with a protein of interest. By transgene expression or CRISPR-mediated locus-specific knock-in, we exemplify a generalizable strategy to study the immediate consequence of protein loss. Using dTAG, we observe an unexpected superior antiproliferative effect of pan-BET bromodomain degradation over selective BRD4 degradation, characterize immediate effects of KRASG12V loss on proteomic signaling, and demonstrate rapid degradation in vivo. This technology platform will confer kinetic resolution to biological investigation and provide target validation in the context of drug discovery.
ConcentrationVolumeMass1 mg5 mg10 mg
0.5 mM1.91 mL9.53 mL19.06 mL
2.5 mM0.38 mL1.91 mL3.81 mL
5 mM0.19 mL0.95 mL1.91 mL
25 mM0.04 mL0.19 mL0.38 mL

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* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

* Total Molecular Weight:
g/mol
Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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