XZ739

 CAS No.: 2365172-19-4  Cat No.: BP-400112  Purity: ≥98% 4.5  

XZ739 is a cereblon-dependent PROTAC degrader designed to target BCL-XL, an anti-apoptotic member of the BCL-2 protein family. Public sources identify BCL-XL as the target and cereblon as the recruited E3 ligase, while detailed target-pocket and ternary-complex structural information is not fully disclosed in open supplier summaries. In PROTAC design, the BCL-XL recognition element engages the anti-apoptotic protein, the linker arranges the bifunctional molecule, and the cereblon ligand recruits CRL4-cereblon machinery. Mechanistically, XZ739 promotes BCL-XL ubiquitination and proteasomal degradation, leading to apoptosis-associated cellular responses in experimental systems. It is useful for studying BCL-XL dependency, apoptotic priming, anti-apoptotic protein degradation, cereblon-based degrader design for BCL-2-family targets, and experimental comparisons between BCL-XL inhibition and BCL-XL protein depletion in tumor-cell viability and caspase-activation assays.

XZ739

Structure of 2365172-19-4

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Category
PROTAC
Molecular Formula
C65H76ClF3N8O12S3
Molecular Weight
1349.99
Appearance
Solid Powder

* For research and manufacturing use only. Not for human or clinical use.

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Purity
≥98%
Solubility
Soluble in DMSO (20 mg/mL, 14.81 mM, Need ultrasonic)
Appearance
Solid Powder
Storage
Store at -20°C, stored under nitrogen
IUPACName
4-[4-[[2-(4-chlorophenyl)-5,5-dimethylcyclohexen-1-yl]methyl]piperazin-1-yl]-N-[4-[[(2R)-4-[2-[2-[2-[2-[[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]amino]ethoxy]ethoxy]ethoxy]ethyl-methylamino]-1-phenylsulfanylbutan-2-yl]amino]-3-(trifluoromethylsulfonyl)phenyl]sulfonylbenzamide
Synonyms
4-(4-((4'-chloro-4,4-dimethyl-3,4,5,6-tetrahydro-[1,1'-biphenyl]-2-yl)methyl)piperazin-1-yl)-N-((4-(((15R)-1-((2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindolin-4-yl)amino)-12-methyl-16-(phenylthio)-3,6,9-trioxa-12-azahexadecan-15-yl)amino)-3-((trifluoromethyl)sulfonyl)phenyl)sulfonyl)benzamide; 4-(4-{[2-(4-Chlorophenyl)-5,5-dimethyl-1-cyclohexen-1-yl]methyl}-1-piperazinyl)-N-({4-({(1R)-15-{[2-(2,6-dioxo-3-piperidinyl)-1,3-dioxo-2,3-dihydro-1H-isoindol-4-yl]amino}-4-methyl-1-[(phenylsulfanyl)methyl]-7,10,13-trioxa-4-azapentadec-1-yl}amino)-3-[(trifluoromethyl)sulfonyl]phenyl}sulfonyl)benzamide
Density
1.44±0.1 g/cm3 (Predicted)
InChI Key
RTASGZOITGGVPZ-YJUSKGKKSA-N
InChI
InChI=1S/C65H76ClF3N8O12S3/c1-64(2)26-24-52(44-12-16-47(66)17-13-44)46(41-64)42-75-29-31-76(32-30-75)49-18-14-45(15-19-49)60(79)73-92(85,86)51-20-21-54(57(40-51)91(83,84)65(67,68)69)71-48(43-90-50-8-5-4-6-9-50)25-28-74(3)33-35-88-37-39-89-38-36-87-34-27-70-55-11-7-10-53-59(55)63(82)77(62(53)81)56-22-23-58(78)72-61(56)80/h4-21,40,48,56,70-71H,22-39,41-43H2,1-3H3,(H,73,79)(H,72,78,80)/t48-,56?/m1/s1
SMILES
CC1(CCC(=C(C1)CN2CCN(CC2)C3=CC=C(C=C3)C(=O)NS(=O)(=O)C4=CC(=C(C=C4)NC(CCN(C)CCOCCOCCOCCNC5=CC=CC6=C5C(=O)N(C6=O)C7CCC(=O)NC7=O)CSC8=CC=CC=C8)S(=O)(=O)C(F)(F)F)C9=CC=C(C=C9)Cl)C
Mechanism

Target: XZ739 targets BCL-XL, an anti-apoptotic member of the BCL-2 protein family.

Binding site: Its BCL-XL ligand engages the canonical hydrophobic BH3-binding groove.

Mechanism of action: XZ739 is a CRBN-recruiting BCL-XL PROTAC designed to convert target binding into selective protein depletion. By linking a BCL-XL-recognition ligand to a cereblon ligand, XZ739 promotes induced proximity between BCL-XL and CRL4CRBN E3 ubiquitin ligase machinery, enabling ubiquitination and proteasome-dependent degradation. This event-driven mechanism is useful for studying BCL-XL dependency while reducing reliance on sustained occupancy-based inhibition. In experimental systems, XZ739 supports evaluation of apoptotic priming, target degradation kinetics, and differential E3 ligase expression effects across cancer cells and platelet-related models.

Applications

• PROTAC-Mediated Kinase Degradation: XZ739 is instrumental in selectively degrading kinases through the ubiquitin-proteasome system, enabling researchers to dissect kinase signaling pathways and their roles in disease progression. This approach facilitates the identification of novel therapeutic targets by observing the functional consequences of kinase depletion.

• Targeted Degradation in Cancer Research: Utilizing XZ739 allows for the precise degradation of oncogenic proteins, providing insights into tumorigenesis and cancer cell survival mechanisms. By targeting specific cancer-related proteins, researchers can explore the potential for developing innovative cancer therapies.

• Investigating Protein-Protein Interactions: XZ739 enables the targeted degradation of proteins involved in critical protein-protein interactions, offering a powerful tool to study the dynamic nature of these interactions. This application aids in understanding complex biological processes and the development of targeted interventions.

• Advancing Neurodegenerative Disease Studies: XZ739 facilitates the degradation of proteins implicated in neurodegenerative disorders, helping researchers elucidate the molecular underpinnings of diseases such as Alzheimer's and Parkinson's. This targeted approach supports the exploration of potential therapeutic strategies for these challenging conditions.

1. Strategies to Reduce the On-Target Platelet Toxicity of Bcl-xL Inhibitors: PROTACs, SNIPERs and Prodrug-Based Approaches
Anne Sophie Voisin-Chiret, Arvind Negi Chembiochem . 2022 Jun 20;23(12):e202100689. doi: 10.1002/cbic.202100689.
Apoptosis is a highly regulated cellular process. Aberration in apoptosis is a common characteristic of various disorders. Therefore, proteins involved in apoptosis are prime targets in multiple therapies. Bcl-xLis an antiapoptotic protein. Compared to other antiapoptotic proteins, the expression of Bcl-xLis common in solid tumors and, to an extent, in some leukemias and lymphomas. The overexpression of Bcl-xLis also linked to survival and chemoresistance in cancer and senescent cells. Therefore, Bcl-xLis a promising anticancer and senolytic target. Various nanomolar range Bcl-xLinhibitors have been developed. ABT-263 was successfully identified as a Bcl-xL/Bcl-2 dual inhibitor. But it failed in the clinical trial (phase-II) because of its on-target platelet toxicity, which also implies an essential role of Bcl-xLprotein in the survival of human platelets. Classical Bcl-xLinhibitor designs utilize occupancy-driven pharmacology with typical shortcomings (such as dose-dependent off-target and on-target platelet toxicities). Hence, event-driven pharmacology-based approaches, such as proteolysis targeting chimeras (PROTACs) and SNIPERs (specific non-genetic IAP-based protein erasers) have been developed. The development of Bcl-xLbased PROTACs was expected, as 600 E3-ligases are available in humans, while some (such as cereblon (CRBN), von Hippel-Lindau (VHL)) are relatively less expressed in platelets. Therefore, E3 ligase ligand-based Bcl-xLPROTACs (CRBN: XZ424, XZ739; VHL: DT2216, PZ703b, 753b) showed a significant improvement in platelet therapeutic index than their parent molecules (ABT-263: DT2216, PZ703b, 753b, XZ739, PZ15227; A1155463: XZ424). Other than their distinctive pharmacology, PROTACs are molecularly large, which limits their cell permeability and plays a role in improving their cell selectivity. We also discuss prodrug-based approaches, such as antibody-drug conjugates (ABBV-155), phosphate prodrugs (APG-1252), dendrimer conjugate (AZD0466), and glycosylated conjugates (Nav-Gal). Studies of in-vitro, in-vivo, structure-activity relationships, biophysical characterization, and status of preclinical/clinical inhibitors derived from these strategies are also discussed in the review.
2. Discovery of PROTAC BCL-XL degraders as potent anticancer agents with low on-target platelet toxicity
Guangrong Zheng, Yaxia Yuan, Peiyi Zhang, Dinesh Thummuri, Sajid Khan, Xingui Liu, Xuan Zhang, Daohong Zhou, Wanyi Hu Eur J Med Chem . 2020 Apr 15;192:112186. doi: 10.1016/j.ejmech.2020.112186.
Anti-apoptotic protein BCL-XLplays a key role in tumorigenesis and cancer chemotherapy resistance, rendering it an attractive target for cancer treatment. However, BCL-XLinhibitors such as ABT-263 cannot be safely used in the clinic because platelets solely depend on BCL-XLto maintain their viability. To reduce the on-target platelet toxicity associated with the inhibition of BCL-XL, we designed and synthesized PROTAC BCL-XLdegraders that recruit CRBN or VHL E3 ligase because both of these enzymes are poorly expressed in human platelets compared to various cancer cell lines. We confirmed that platelet-toxic BCL-XL/2 dual inhibitor ABT-263 can be converted into platelet-sparing CRBN/VHL-based BCL-XLspecific degraders. A number of BCL-XLdegraders are more potent in killing cancer cells than their parent compound ABT-263. Specifically, XZ739, a CRBN-dependent BCL-XLdegrader, is 20-fold more potent than ABT-263 against MOLT-4 T-ALL cells and has >100-fold selectivity for MOLT-4 cells over human platelets. Our findings further demonstrated the utility of PROTAC technology to achieve tissue selectivity through recruiting differentially expressed E3 ligases.

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