Methyl 3-Hydroxypropanoate

 CAS No.: 6149-41-3  Cat No.: BP-500150 4.5  

Methyl 3-hydroxypropanoate is a small, bifunctional aliphatic building block featuring a methyl ester and a terminal primary alcohol separated by a three-carbon chain. The ester provides a stable handle for subsequent derivatization, while the alcohol enables straightforward conversion to activated intermediates (e.g., halides, mesylates, or other leaving-group derivatives) that can be used to install or extend linker segments. In PROTAC and targeted protein degradation workflows, such linker fragments are commonly employed to tune the spatial relationship between a ligand for an E3 ligase and the target-binding moiety, thereby influencing ternary complex formation and degradation efficiency. Its compact, flexible scaffold can help optimize linker length and conformational freedom without introducing bulky aromatic elements. As a practical, readily functionalizable component, it supports systematic linker engineering, enabling researchers to generate libraries of conjugates for structure–activity relationship studies and to probe how linker chemistry affects cellular degradation outcomes.

Methyl 3-Hydroxypropanoate

Structure of 6149-41-3

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Category
PROTAC Linker
Molecular Formula
C4H8O3
Molecular Weight
104.10

* For research and manufacturing use only. Not for human or clinical use.

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Popular Publications Citing BOC Sciences Products
Storage
Pure form, -20°C, 3 years; 4°C, 2 years; In solvent, -80°C, 6 months; -20°C, 1 month
Shipping
Room temperature in continental US; may vary elsewhere.
IUPACName
methyl 3-hydroxypropanoate
Synonyms
3-hydroxypropanoic acid methyl ester; methyl 3-hydroxypropanoate
Boiling Point
180.5 °C at 760 mmHg
Density
1.089 g/cm<sup>3</sup>
InChI Key
RVGLEPQPVDUSOJ-UHFFFAOYSA-N
InChI
InChI=1S/C4H8O3/c1-7-4(6)2-3-5/h5H,2-3H2,1H3
SMILES
COC(=O)CCO
1. The genetic basis of 3-hydroxypropanoate metabolism in Cupriavidus necator H16
Christian Arenas-López, Jessica Locker, Diego Orol, Frederik Walter, Tobias Busche, Jörn Kalinowski, Nigel P Minton, Katalin Kovács, Klaus Winzer Biotechnol Biofuels. 2019 Jun 17;12:150.doi: 10.1186/s13068-019-1489-5.eCollection 2019.
Background:3-Hydroxypropionic acid (3-HP) is a promising platform chemical with various industrial applications. Several metabolic routes to produce 3-HP from organic substrates such as sugars or glycerol have been implemented in yeast, enterobacterial species and other microorganisms. In this study, the native 3-HP metabolism of Cupriavidus necator was investigated and manipulated as it represents a promising chassis for the production of 3-HP and other fatty acid derivatives from CO2 and H2. Results:When testing C. necator for its tolerance towards 3-HP, it was noted that it could utilise the compound as the sole source of carbon and energy, a highly undesirable trait in the context of biological 3-HP production which required elimination. Inactivation of the methylcitrate pathway needed for propionate utilisation did not affect the organism's ability to grow on 3-HP. Putative genes involved in 3-HP degradation were identified by bioinformatics means and confirmed by transcriptomic analyses, the latter revealing considerably increased expression in the presence of 3-HP. Genes identified in this manner encoded three putative (methyl)malonate semialdehyde dehydrogenases (mmsA1, mmsA2 and mmsA3) and two putative dehydrogenases (hpdH and hbdH). These genes, which are part of three separate mmsA operons, were inactivated through deletion of the entire coding region, either singly or in various combinations, to engineer strains unable to grow on 3-HP. Whilst inactivation of single genes or double deletions could only delay but not abolish growth, a triple ∆mmsA1∆mmsA2∆mmsA3 knock-out strain was unable utilise 3-HP as the sole source of carbon and energy. Under the used conditions this strain was also unable to co-metabolise 3-HP alongside other carbon and energy sources such as fructose and CO2/H2. Further analysis suggested primary roles for the different mmsA operons in the utilisation of β-alanine generating substrates (mmsA1), degradation of 3-HP (mmsA2), and breakdown of valine (mmsA3).Conclusions:Three different (methyl)malonate semialdehyde dehydrogenases contribute to 3-HP breakdown in C. necator H16. The created triple ∆mmsA1∆mmsA2∆mmsA3 knock-out strain represents an ideal chassis for autotrophic 3-HP production.
2. Anti-hepatitis B virus activity of new pyrimidine and adenine peptide nucleic acid analogues
Wafaei A El-Zayat, Wael A El-Sayed, Adel A-H Abdel-Rahman Z Naturforsch C J Biosci. 2009 Jan-Feb;64(1-2):6-10.doi: 10.1515/znc-2009-1-202.
A number of N-substituted thymine and adenine derivatives, 2a, b and 3a, b, were synthesized by the coupling reaction of 1-bromo-2,2-diethoxyethane with the corresponding base. The corresponding peptide nucleic acid (PNA) analogues, N-substituted ethylamino-3-hydroxypropanoate derivatives 5a, b and ethylamino-3-hydroxybutanoate derivatives 6a, b, were synthesized from the corresponding 2-[3,4-dihydro-5-methyl-2,4-dioxopyrimidin-1(2H)-yl]-acetaldehyde (3a) and 2-[6-amino-4H-purin-9(5H)-yl]-acetaldehyde (3b), respectively. The synthesized compounds were tested for their antiviral activity against hepatitis B virus (HBV). The plaque reduction infectivity assay was used to determine the virus count reduction as a result of the treatment with the tested compounds.
3. Dirhodium(II)-catalyzed C-H amination reaction of (S)-3-(tert-butyldimethylsilyloxy)-2-methylpropyl carbamate: a facile preparation of optically active monoprotected 2-amino-2-methyl-1,3-propanediol
Takayuki Yakura, Yuya Yoshimoto, Chisaki Ishida Chem Pharm Bull (Tokyo). 2007 Sep;55(9):1385-9.doi: 10.1248/cpb.55.1385.
Dirhodium(II)-catalyzed C-H amination reaction of (S)-3-(tert-butyldimethylsilyloxy)-2-methylpropyl carbamate, which was easily prepared from methyl (S)-2-methyl-3-hydroxypropanoate, proceeded more smoothly than those of their 2-(methoxycarbonyl)propyl derivative to give the corresponding oxazolidinone in excellent yield. The resulting oxazolidinone was converted efficiently into both (R)-monoprotected and (S)-monoprotected 2-amino-2-methyl-1,3-propanediols.

Methyl 3-Hydroxypropanoate, is a small, functionalized building block designed for assembling PROTACs through reliable chemoselective transformations. Its hydroxy and ester functionalities enable modular attachment strategies that support efficient synthesis of bifunctional degraders. The molecule offers practical handling and compatibility with standard organic synthesis workflows, facilitating rapid linker incorporation into targeted protein degradation constructs. Detailed structural and reactivity considerations are provided below.

Structure: The linker contains a methyl ester and a terminal secondary alcohol, connected through a short aliphatic chain. It features ester carbonyl and ether-like oxygen environments, along with hydrogen-bonding capacity from the hydroxyl group. Overall, it is a polar, flexible, small-molecule scaffold with reactive functional handles for PROTAC assembly.

Reactivity: The ester can participate in acyl substitution or be converted to activated derivatives for nucleophilic coupling, while the alcohol can undergo esterification, ether formation, or selective protection/deprotection strategies to tune chemoselectivity. Typical PROTAC linker construction uses standard ester-activation chemistries with nucleophilic partners under inert or controlled conditions, often employing base or coupling reagents in polar organic solvents to drive clean bond formation.

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It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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