Methyl 3-hydroxypropanoate is a small, bifunctional aliphatic building block featuring a methyl ester and a terminal primary alcohol separated by a three-carbon chain. The ester provides a stable handle for subsequent derivatization, while the alcohol enables straightforward conversion to activated intermediates (e.g., halides, mesylates, or other leaving-group derivatives) that can be used to install or extend linker segments. In PROTAC and targeted protein degradation workflows, such linker fragments are commonly employed to tune the spatial relationship between a ligand for an E3 ligase and the target-binding moiety, thereby influencing ternary complex formation and degradation efficiency. Its compact, flexible scaffold can help optimize linker length and conformational freedom without introducing bulky aromatic elements. As a practical, readily functionalizable component, it supports systematic linker engineering, enabling researchers to generate libraries of conjugates for structure–activity relationship studies and to probe how linker chemistry affects cellular degradation outcomes.
Structure of 6149-41-3
* For research and manufacturing use only. Not for human or clinical use.
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Methyl 3-Hydroxypropanoate, is a small, functionalized building block designed for assembling PROTACs through reliable chemoselective transformations. Its hydroxy and ester functionalities enable modular attachment strategies that support efficient synthesis of bifunctional degraders. The molecule offers practical handling and compatibility with standard organic synthesis workflows, facilitating rapid linker incorporation into targeted protein degradation constructs. Detailed structural and reactivity considerations are provided below.
Structure: The linker contains a methyl ester and a terminal secondary alcohol, connected through a short aliphatic chain. It features ester carbonyl and ether-like oxygen environments, along with hydrogen-bonding capacity from the hydroxyl group. Overall, it is a polar, flexible, small-molecule scaffold with reactive functional handles for PROTAC assembly.
Reactivity: The ester can participate in acyl substitution or be converted to activated derivatives for nucleophilic coupling, while the alcohol can undergo esterification, ether formation, or selective protection/deprotection strategies to tune chemoselectivity. Typical PROTAC linker construction uses standard ester-activation chemistries with nucleophilic partners under inert or controlled conditions, often employing base or coupling reagents in polar organic solvents to drive clean bond formation.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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