PF-06650833 is a small-molecule ligand for IRAK4 and can be used as a target-recognition element in IRAK4-directed PROTAC design. The compound engages the kinase domain within the nucleotide-binding region and provides a defined heteroaromatic scaffold that can be adapted for linker installation through medicinal chemistry optimization. In a PROTAC architecture, the PF-06650833-derived warhead binds IRAK4, while the opposite molecular terminus recruits an E3 ligase ligand; the linker controls the spatial relationship required for productive ternary complex formation. This design converts reversible target engagement into proximity-induced ubiquitination and proteasome-dependent protein depletion. PF-06650833 is valuable for constructing IRAK4 degraders, comparing catalytic inhibition with protein removal, investigating IRAK4 scaffold functions in innate immune signaling, and optimizing linker exit vectors, cellular target engagement, degradation selectivity, and intracellular pharmacological behavior.
Structure of 1817626-54-2
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| Size | Price | Stock | Quantity |
|---|---|---|---|
| 25 mg | $298 | In stock |
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Target: IRAK4 kinase is the validated target; PF-06650833 binds IRAK4 as a potent selective inhibitor.
Mechanism of Action: PF-06650833 can function as the target-recognition ligand for IRAK4-directed degrader design. In a bifunctional PROTAC, the ligand occupies the IRAK4 small-molecule binding site while a linker connects it to an E3 ligase ligand, such as a CRBN or VHL recruiter selected experimentally. The resulting conjugate is designed to bring IRAK4 into proximity with the recruited E3 ligase, enabling productive ternary-complex formation. If the geometry supports ubiquitin transfer, IRAK4 is polyubiquitinated and subsequently eliminated through the ubiquitin-proteasome system. This establishes a testable protein-depletion mechanism for research assays.
Applications• PROTAC-Mediated BRD Degradation: PF-06650833 can serve as a high-affinity ligand for building BRD-targeting PROTACs, enabling recruitment of an E3 ligase to drive ubiquitination and proteasomal degradation. This application supports systematic evaluation of degrader potency by comparing PROTAC designs, linker lengths, and E3 ligase choices to optimize target removal.
• E3 Ligase Recruitment Optimization: Use PF-06650833-derived PROTAC scaffolds to screen multiple E3 ligase recruiters and assess how ligase selection impacts ubiquitin transfer, degradation kinetics, and cellular selectivity. By varying recruiter identity and attachment geometry, researchers can map structure–activity relationships that govern productive ternary complex formation.
• Ternary Complex and Kinetics Studies: PF-06650833-based PROTACs are suitable for mechanistic studies measuring ternary complex stability between the target, PROTAC, and E3 ligase. These experiments can quantify how binding cooperativity correlates with degradation efficiency, including time-resolved assays that distinguish fast-acting degradation from reversible occupancy.
• Resistance Mechanism Investigation: PF-06650833-enabled degraders can be used to probe how alterations in the target binding interface, E3 ligase expression, or proteostasis pathways affect degradation outcomes. Applying PROTACs across engineered or naturally variant systems helps identify determinants of resistance and guides redesign toward more robust targeted protein degradation.
| ConcentrationVolumeMass | 1 mg | 5 mg | 10 mg |
|---|---|---|---|
| 1 mM | 2.7672 mL | 13.8362 mL | 27.6725 mL |
| 5 mM | 0.5534 mL | 2.7672 mL | 5.5345 mL |
| 10 mM | 0.2767 mL | 1.3836 mL | 2.7672 mL |
PF-06650833, also known as zimlovisertib, is an IRAK4-directed small-molecule ligand with a compact heteroaromatic core suitable for target-engagement studies and exploratory degrader design. Its defined stereochemistry and amide-bearing scaffold can support linker-position assessment in PROTAC programs. This molecule is described in detail below.
Structure: The structure contains a methoxyisoquinoline carboxamide connected through an ether to a chiral fluoro-ethyl oxopyrrolidine. The rigid heteroaromatic amide and multiple heteroatoms provide hydrogen-bonding capacity while preserving a relatively compact ligand framework.
Reactivity: For exploratory IRAK4 PROTAC design, linker attachment would require prior SAR-guided selection of a solvent-exposed exit vector, most plausibly through derivatization of the amide-adjacent or methoxy/heteroaryl periphery rather than disruption of the chiral lactam-binding elements. PEG, alkyl, or mixed alkyl-PEG linkers could be screened with CRBN ligands such as pomalidomide/lenalidomide analogues or VHL ligands such as VH032, provided target binding is retained after modification.
Hello, can PF-06650833 be used in vitro?
In vitro, PF-06650833 inhibited human primary cell inflammatory responses to physiologically relevant stimuli generated with Rheumatoid arthritis (RA) and Systemic lupus erythematosus (SLE) rats plasma.
27/3/2020
Dear team, what is the activity of PF-06650833 in vivo?
In vivo, PF-06650833 reduced circulating autoantibody levels in the pristane-induced and MRL/lpr murine models of lupus and protected against collagen-induced arthritis (CIA) in rats.
27/3/2020
Hi, I was just wondering how PF-06650833 inhibits LPS-induced TNF-α.
PF-06650833 treatment significantly inhibits LPS-induced TNF-α in a dose dependent manner.
27/3/2020
What are the pharmacologic properties of PF-06650833?
PF-06650833 was nearly 7,000 times more selective for IRAK4 than for IRAK1. In PBMCs stimulated with the TLR-7/8 ligand R848, PF-06650833 had an IC50 of 2.4 nM for inhibition of tumor necrosis factor (TNF) release and was potent in human whole blood, with an IC50 of 8.8 nM.
18/5/2020
What is the in vitro inhibitory activity of PF-06650833 against IRAK4?
The IC50 value of PF-06650833 against IRAK4 is 0.52 nM. In an in vitro treatment of LPS stimulated human PBMC, PF-06650833 decreased inflammatory cytokines secretion effectively, such as IL-1, IFN-γ, TNF-α, and IL-17.
28/6/2021
What is the biological activity of PF-06650833 in vitro/in vivo?
PF-06650833 is a selective, highly potent, small molecule, reversible inhibitor of IRAK4. In vitro and in vivo studies have reported the inhibition of TLR-induced inflammation by small molecular inhibitor PF-06650833.
31/7/2021
inhibit hERG current
In a voltage clamp assay, PF-06650833 performed well at inhibiting hERG current by 25% at 100 μM.
28/10/2019
decrease inflammatory cells infiltrating lung tissue
In our test, PF-06650833 remarkably decreased inflammatory cells infiltrating lung tissue and neutrophil count in BALF. Very useful for our study!
28/10/2019
downregulate genes
In my study, PF-06650833 markedly downregulated genes more efficiently than dexamethasone, especially TNF, IL-17, interferon, and Toll-like receptor signaling. I strongly recommend to buy this product again.
28/10/2019
PF-06650833 activity in mouse model
I applied IRAK4 inhibitor, PF-06650833 to an inhaled lipopolysaccharide (LPS)-induced ARDS mouse model with control of high dose dexamethasone (10 mg/kg). In this experiment, PF-06650833 had excellent IC50 on IRAK4 kinase activity.
9/12/2020
PK studies following single ascending doses of PF-06650833 formulations
In SAD, plasma concentrations of PF-06650833 formulations increased in a dose-dependent manner with SAD of ≤ 100 mg and in a less than proportional manner with higher doses. As I expected, lower Cmax values were observed in all comparable doses of the formulations.
27/4/2022
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