Triethylene glycol monomethyl ether is a polyethylene glycol–derived linker building block featuring an ether-rich, flexible chain terminated with a methyl ether. Structurally, it provides a hydrophilic, conformationally mobile segment that can be used to tune solubility, reduce nonspecific hydrophobic contacts, and modulate the effective distance and orientation between a target-binding ligand and an E3-recruiting moiety in PROTAC architectures. In targeted protein degradation designs, such ether linkers help maintain productive ternary-complex formation by allowing relative motion of conjugated domains while maintaining overall aqueous compatibility, which is critical for consistent cellular uptake and degradation efficacy. As a practical reagent for linker optimization, it supports systematic variation of linker length and polarity, enabling researchers to assess effects on binding cooperativity, proteasome engagement, and degradation potency across related PROTAC series.
Structure of 112-35-6
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Triethylene glycol monomethyl ether is a flexible, ether-rich linker building block commonly used in PROTAC linker design to tune solubility, conformational freedom, and effective spatial presentation between ligand warheads. Its ether functionality supports favorable physicochemical properties that can improve formulation and enable systematic linker optimization. Detailed structural and synthetic considerations for PROTAC construction are provided below.
Structure: The molecule is composed of a triethylene glycol chain bearing a terminal methyl ether, featuring multiple ether oxygen atoms that provide hydrogen-bond acceptor sites. It contains C–O and C–C single bonds, yielding a flexible, solvated scaffold with low polarity gradients and ether-based connectivity.
Reactivity: As an ether, it is generally stable under many coupling conditions and is typically used as a pre-functionalized linker component rather than a reactive electrophile. PROTAC assembly commonly relies on orthogonal functional handles on the partner ligands (for example, amines, acids, or activated esters) to form stable amide, ester, or related linkages. Solvent systems such as polar aprotic media and standard coupling reagents are selected to preserve ether integrity and maintain linker solubility.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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