N-Bromoacetyl-β-alanine

 CAS No.: 89520-11-6  Cat No.: BP-500117  Purity: ≥95% 4.5  

N-Bromoacetyl-β-alanine is a bromoacetamide derivative of β-alanine featuring an N-bromoacetyl electrophile and a free carboxylic acid that can be used as a functional handle for PROTAC linker construction. Structurally, it provides a short, rigid-to-semi-flexible two-carbon alkyl spacer terminating in a highly reactive bromoacetyl group capable of forming stable covalent bonds with nucleophilic residues (e.g., amines or thiols) under appropriate conditions, while the β-alanine carboxylate enables further coupling or controlled solubility tuning. In targeted protein degradation workflows, such electrophilic linkers are commonly employed to connect a targeting ligand to a second module (e.g., a ubiquitin-recruiting moiety or another reactive intermediate) through chemoselective amide or thioether formation, thereby enforcing the spatial arrangement required for productive ternary complex formation. Its value lies in offering a practical, literature-supported strategy for modular synthesis of degraders and for optimizing linker attachment chemistry without introducing complex stereochemical elements.

N-Bromoacetyl-β-alanine

Structure of 89520-11-6

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Category
PROTAC Linker
Molecular Formula
C5H8BrNO3
Molecular Weight
210.03
Appearance
Pale yellow semi-solid

* For research and manufacturing use only. Not for human or clinical use.

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Purity
≥95%
Solubility
10 mm in DMSO
Appearance
Pale yellow semi-solid
ShelfLife
0-4°C for short term (days to weeks), or -20°C for long term (months).
Storage
Store at -20 °C, keep in dry and avoid sunlight.
Shipping
-20°C (International: -20°C)
IUPACName
3-[(2-bromoacetyl)amino]propanoic acid
Synonyms
3-(2-Bromoacetamido)propanoic acid; N-(Bromoacetyl)-beta-alanine
Boiling Point
433.4°C at 760 mmHg
Density
1.682g/cm3
InChI Key
ULKDIPSSLZFIQU-UHFFFAOYSA-N
InChI
InChI=1S/C5H8BrNO3/c6-3-4(8)7-2-1-5(9)10/h1-3H2,(H,7,8)(H,9,10)
SMILES
C(CNC(=O)CBr)C(=O)O
1. Synthesis of N alpha-(tert-butoxycarbonyl)-N epsilon-[N-(bromoacetyl)-beta-alanyl]-L-lysine: its use in peptide synthesis for placing a bromoacetyl cross-linking function at any desired sequence position
J K Inman, P F Highet, N Kolodny, F A Robey Bioconjug Chem. 1991 Nov-Dec;2(6):458-63. doi: 10.1021/bc00012a014.
A new amino acid derivative, N alpha-(tert-butoxycarbonyl)-N epsilon-[N-(bromoacetyl)-beta-alanyl]-L-lysine (BBAL), has been synthesized as a reagent to be used in solid-phase peptide synthesis for introducing a side-chain bromoacetyl group at any desired position in a peptide sequence. The bromoacetyl group subsequently serves as a sulfhydryl-selective cross-linking function for the preparation of cyclic peptides, peptide conjugates, and polymers. BBAL is synthesized by condensation of N-bromoacetyl-beta-alanine with N alpha-Boc-L-lysine and is a white powder which is readily stored, weighed, and used with a peptide synthesizer, programmed for N alpha-Boc amino acid derivatives. BBAL residues are stable to final HF deprotection/cleavage. BBAL peptides can be directly coupled to other molecules or surfaces which possess free sulfhydryl groups by forming stable thioether linkages. Peptides containing both BBAL and cysteine residues can be self-coupled to produce either cyclic molecules or linear peptide polymers, also linked through thioether bonds. Products made with BBAL peptides may be characterized by amino acid analysis of acid hydrolyzates by quantification of beta-alanine, which separates from natural amino acids in suitable analytical systems. Where sulfhydryl groups on coupling partners arise from cysteine residues, S-(carboxymethyl)cysteine in acid hydrolyzates may also be assayed for this purpose. Examples are given of the use of BBAL in preparing peptide polymers and a peptide conjugate with bovine albumin to serve as immunogens or model vaccine components.
ConcentrationVolumeMass1 mg5 mg10 mg
1 mM4.7612 mL23.8061 mL47.6122 mL
5 mM0.9522 mL4.7612 mL9.5224 mL
10 mM0.4761 mL2.3806 mL4.7612 mL

N-Bromoacetyl-β-alanine is a bromoacetylated amino acid linker designed to enable robust covalent attachment in PROTAC construction. Its activated bromoacetyl motif supports selective nucleophile-mediated reactions, facilitating efficient installation of linker segments between targeting ligands and E3 ligase recruiters. The resulting conjugates are well suited for systematic structure–activity studies, where linker chemistry strongly influences degradation potency and selectivity. Detailed structural and reactivity considerations are provided below.

Structure: The linker contains an N-bromoacetyl functional group attached to a β-amino acid framework, incorporating an amide linkage and a terminal bromoalkyl electrophile. It features polar amide and amino functionalities that support hydrogen bonding and aqueous compatibility, while the bromoacetyl moiety provides a reactive handle for covalent conjugation.

Reactivity: The bromoacetyl group undergoes nucleophilic substitution with appropriate nucleophiles (commonly amines or other sulfur/oxygen nucleophiles depending on the partner ligand) to form stable C–N or related linkages. PROTAC assembly typically employs controlled base activation and temperature management to balance reaction rate and minimize side reactions such as hydrolysis. Suitable solvents include polar aprotic or mixed aqueous media, and reaction monitoring is recommended to optimize coupling efficiency and preserve functional group integrity.

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It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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