N-Bromoacetyl-β-alanine is a bromoacetamide derivative of β-alanine featuring an N-bromoacetyl electrophile and a free carboxylic acid that can be used as a functional handle for PROTAC linker construction. Structurally, it provides a short, rigid-to-semi-flexible two-carbon alkyl spacer terminating in a highly reactive bromoacetyl group capable of forming stable covalent bonds with nucleophilic residues (e.g., amines or thiols) under appropriate conditions, while the β-alanine carboxylate enables further coupling or controlled solubility tuning. In targeted protein degradation workflows, such electrophilic linkers are commonly employed to connect a targeting ligand to a second module (e.g., a ubiquitin-recruiting moiety or another reactive intermediate) through chemoselective amide or thioether formation, thereby enforcing the spatial arrangement required for productive ternary complex formation. Its value lies in offering a practical, literature-supported strategy for modular synthesis of degraders and for optimizing linker attachment chemistry without introducing complex stereochemical elements.
Structure of 89520-11-6
* For research and manufacturing use only. Not for human or clinical use.
| Size | Price | Stock | Quantity |
|---|---|---|---|
| -- | $-- | In stock |
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| ConcentrationVolumeMass | 1 mg | 5 mg | 10 mg |
|---|---|---|---|
| 1 mM | 4.7612 mL | 23.8061 mL | 47.6122 mL |
| 5 mM | 0.9522 mL | 4.7612 mL | 9.5224 mL |
| 10 mM | 0.4761 mL | 2.3806 mL | 4.7612 mL |
N-Bromoacetyl-β-alanine is a bromoacetylated amino acid linker designed to enable robust covalent attachment in PROTAC construction. Its activated bromoacetyl motif supports selective nucleophile-mediated reactions, facilitating efficient installation of linker segments between targeting ligands and E3 ligase recruiters. The resulting conjugates are well suited for systematic structure–activity studies, where linker chemistry strongly influences degradation potency and selectivity. Detailed structural and reactivity considerations are provided below.
Structure: The linker contains an N-bromoacetyl functional group attached to a β-amino acid framework, incorporating an amide linkage and a terminal bromoalkyl electrophile. It features polar amide and amino functionalities that support hydrogen bonding and aqueous compatibility, while the bromoacetyl moiety provides a reactive handle for covalent conjugation.
Reactivity: The bromoacetyl group undergoes nucleophilic substitution with appropriate nucleophiles (commonly amines or other sulfur/oxygen nucleophiles depending on the partner ligand) to form stable C–N or related linkages. PROTAC assembly typically employs controlled base activation and temperature management to balance reaction rate and minimize side reactions such as hydrolysis. Suitable solvents include polar aprotic or mixed aqueous media, and reaction monitoring is recommended to optimize coupling efficiency and preserve functional group integrity.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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