2-(Benzyloxy)ethanol is a bifunctional ether alcohol featuring a benzyloxy-protected hydroxyl motif connected through a two-carbon ethylene spacer, enabling controlled linkage formation in synthetic building blocks. In PROTAC construction, such ether alcohol linkers are commonly used to introduce a flexible, chemically addressable handle that can be converted into coupling-ready derivatives (e.g., activated esters or halides) and subsequently joined to ligands bearing complementary functional groups. The benzyloxy group can also serve as a removable protecting group strategy during multi-step assembly, allowing selective deprotection to reveal a reactive alcohol for final conjugation or for tuning physicochemical properties such as polarity and solubility. Its ether-based, short-chain architecture helps modulate linker flexibility and effective reach between the target-binding moiety and the E3 ligase ligand, which is critical for productive ternary complex formation. As a practical intermediate, it supports systematic linker optimization and efficient synthesis of degraders for mechanistic and structure–activity relationship studies.
Structure of 622-08-2
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2-(Benzyloxy)ethanol, provides a flexible ether-containing handle that can be used to connect and spatially tune small-molecule ligands in targeted protein degradation constructs. Its ether linkage and terminal alcohol functionality support robust synthetic modification strategies commonly employed in PROTAC assembly. The resulting linker architecture can help optimize linker length and conformational freedom to improve productive ternary complex formation, and the detailed structure and reactivity considerations are provided below.
Structure: The molecule contains a benzyloxy ether and a terminal primary alcohol, connected through an ethylene spacer. It features an aromatic benzyl group, ether oxygen atoms, and an alcohol capable of hydrogen bonding. Overall, it is a small, polar, oxygen-rich linker with ether and hydroxyl functional groups suitable for derivatization.
Reactivity: The terminal alcohol enables standard PROTAC linker functionalization via esterification or ether formation, typically using activated carboxylic acids or electrophiles under mild base conditions. For benzyl-protected alcohol strategies, hydrogenolysis or other deprotection methods can regenerate the free hydroxyl when needed. Common coupling approaches rely on nucleophilic substitution or acylation principles, with appropriate catalysts and dry, inert solvents to minimize side reactions.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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