Tri-(PEG1-C2-acid) is a tri-functional PROTAC linker building block featuring three short oligo(ethylene glycol) (PEG1) arms terminated with carboxylic acid groups, providing a compact, hydrophilic, and water-compatible spacer architecture. The PEG1–C2 acid segments impart conformational flexibility and improve solubility, while the terminal carboxylates enable robust, chemoselective conjugation to complementary PROTAC components through amide or related coupling strategies. In targeted protein degradation designs, such linkers are used to tune the relative positioning and effective reach between the ligand that recruits an E3 ligase and the ligand that engages the target protein, thereby modulating ternary complex formation and degradation potency. As a modular scaffold, Tri-(PEG1-C2-acid) is valuable for systematic linker optimization, including multivalent or branched constructs where three attachment points can facilitate controlled geometry and reduce aggregation, supporting reproducible synthesis and downstream biochemical evaluation.
Structure of 1381861-95-5
* For research and manufacturing use only. Not for human or clinical use.
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Tri-(PEG1-C2-acid) is a PEG-based, carboxylic-acid functional linker designed to support targeted protein degradation workflows by enabling modular conjugation between a ligand for an E3 ligase and a ligand for the target protein. Its hydrophilic, flexible architecture can help maintain solubility and provide an appropriate spatial relationship for productive ternary complex formation. The points below describe the molecule’s structure and practical reactivity considerations in PROTAC assembly.
Structure: Tri-functional polyethylene glycol motifs bearing carboxylic-acid groups provide a flexible, water-compatible linker framework. The structure contains ether linkages typical of PEG segments and terminal carboxyl functionalities suitable for amide or ester-forming coupling chemistry, supporting controlled linker length and conformational adaptability.
Reactivity: The carboxylic-acid groups are suitable for standard PROTAC linker construction via activation followed by nucleophilic substitution, most commonly amide bond formation with amine-bearing partners. Typical approaches use carbodiimide coupling systems with additives to suppress side reactions, often in polar aprotic solvents under mild, buffered conditions. Careful control of pH and stoichiometry helps preserve functional group integrity during conjugation.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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