1,5-Diamino-3-oxapentane is a bifunctional linker building block featuring two primary amine termini separated by a three-carbon framework containing an ether oxygen. Structurally, it provides a flexible, hydrophilic spacer that can be used to connect or distance reactive handles on PROTAC components, such as an E3-ligase ligand and a target-binding moiety, while maintaining appropriate conformational freedom for productive ternary complex formation. In PROTAC design, linkers must balance length, flexibility, and polarity to promote effective binding geometry and to reduce off-target interactions; diamino-ether spacers like this are commonly employed for amide or urea coupling strategies after suitable functional group activation. Its value for targeted protein degradation research lies in enabling systematic structure–activity relationship studies, where modifying linker composition and spacing can tune degradation potency, cooperativity, and cellular activity.
Structure of 2752-17-2
* For research and manufacturing use only. Not for human or clinical use.
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1,5-Diamino-3-oxapentane, provides a flexible, hydrophilic, diamine-based scaffold suitable for constructing bifunctional degraders. Its ether-containing backbone and primary amine termini enable robust conjugation strategies to assemble ligand–linker–ligand architectures. The resulting linkers can support efficient spatial presentation and tunable geometry in targeted protein degradation workflows. Detailed structural and synthetic considerations are provided below.
Structure: 1,5-Diamino-3-oxapentane is a flexible aliphatic linker featuring a central ether oxygen within a short chain and two primary amine groups at the terminal positions. The molecule contains C–N and C–O single bonds, with basic amine functionality that can form salts and participate in standard amide or carbamate-forming coupling chemistry.
Reactivity: The two primary amines are well suited for nucleophilic acyl substitution and condensation reactions commonly used in PROTAC synthesis. Typical approaches include forming amide bonds via activated carboxylic acids or using carbamate-forming reagents, often under mild base conditions. Appropriate solvents such as polar aprotic media or aqueous-organic mixtures are selected to maintain solubility and minimize side reactions. Reaction planning should consider pH control to preserve amine reactivity and compatibility with functional groups on the targeting ligands.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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