SJFα

 CAS No.: 2254609-27-1  Cat No.: BP-400082  Purity: ≥95% 4.5  

SJFα is a von Hippel-Lindau-based PROTAC degrader developed for selective degradation of p38α MAP kinase. Public sources describe it as a VHL-ligand-containing PROTAC with a defined linker and preferential degradation of p38α relative to other p38 isoforms, although detailed atomistic ternary-complex binding information is not fully provided in product summaries. In PROTAC design, the p38α-recognition element binds the kinase target, the linker positions the two proteins, and the VHL ligand recruits the VHL E3 ligase complex. Mechanistically, SJFα converts p38α engagement into induced proximity with ubiquitination machinery, leading to proteasome-dependent removal of the kinase protein. It is valuable for studying p38α-specific signaling, MAPK isoform selectivity, VHL-based kinase degrader design, degradation versus catalytic inhibition, and how linker length and ternary-complex geometry influence selective degradation within closely related kinase families.

SJFα

Structure of 2254609-27-1

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Category
PROTAC
Molecular Formula
C59H67F2N7O11S
Molecular Weight
1120.27
Appearance
White Solid

* For research and manufacturing use only. Not for human or clinical use.

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Popular Publications Citing BOC Sciences Products
Purity
≥95%
Solubility
Soluble in DMSO
Appearance
White Solid
Storage
Store at 2-8°C for short term (days to weeks) or -20°C for long term (months to years)
Shipping
Room temperature in continental US; may vary elsewhere.
IUPACName
1-N'-[3-fluoro-4-[7-[4-[4-[2-[[(2S)-1-[(2S,4R)-4-hydroxy-2-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methylcarbamoyl]pyrrolidin-1-yl]-3,3-dimethyl-1-oxobutan-2-yl]amino]-2-oxoethoxy]butoxy]butoxy]-6-methoxyquinolin-4-yl]oxyphenyl]-1-N-(4-fluorophenyl)cyclopropane-1,1-dicarboxamide
Synonyms
N-[(4-{4-[(4-{2-Fluoro-4-[({1-[(4-fluorophenyl)carbamoyl]cyclopropyl}carbonyl)amino]phenoxy}-6-methoxy-7-quinolinyl)oxy]butoxy}butoxy)acetyl]-3-methyl-L-valyl-(4R)-4-hydroxy-N-[4-(4-methyl-1,3-thiazol-5-yl)benzyl]-L-prolinamide; L-Prolinamide, N-[2-[4-[4-[[4-[2-fluoro-4-[[[1-[[(4-fluorophenyl)amino]carbonyl]cyclopropyl]carbonyl]amino]phenoxy]-6-methoxy-7-quinolinyl]oxy]butoxy]butoxy]acetyl]-3-methyl-L-valyl-4-hydroxy-N-[[4-(4-methyl-5-thiazolyl)phenyl]methyl]-, (4R)-; SJFa PROTAC; SJFalpha PROTAC; SJFα PROTAC; SJF-6696
Boiling Point
1230.3±65.0°C at 760 mmHg
Density
1.3±0.1 g/cm3
InChI Key
GXDYWQXTEYENEU-WFYKIECOSA-N
InChI
InChI=1S/C59H67F2N7O11S/c1-36-52(80-35-64-36)38-12-10-37(11-13-38)32-63-54(71)46-29-42(69)33-68(46)55(72)53(58(2,3)4)67-51(70)34-77-26-7-6-24-76-25-8-9-27-78-50-31-45-43(30-49(50)75-5)47(20-23-62-45)79-48-19-18-41(28-44(48)61)66-57(74)59(21-22-59)56(73)65-40-16-14-39(60)15-17-40/h10-20,23,28,30-31,35,42,46,53,69H,6-9,21-22,24-27,29,32-34H2,1-5H3,(H,63,71)(H,65,73)(H,66,74)(H,67,70)/t42-,46+,53-/m1/s1
SMILES
CC1=C(SC=N1)C2=CC=C(C=C2)CNC(=O)C3CC(CN3C(=O)C(C(C)(C)C)NC(=O)COCCCCOCCCCOC4=CC5=NC=CC(=C5C=C4OC)OC6=C(C=C(C=C6)NC(=O)C7(CC7)C(=O)NC8=CC=C(C=C8)F)F)O
Pub Chem ID
137628677
Mechanism

Target: SJFα selectively targets p38α MAP kinase, with weaker activity toward p38δ.

Binding site: Its foretinib-derived ligand engages the ATP-binding catalytic pocket of p38α.

Mechanism of action: SJFα is a VHL-based PROTAC that links a foretinib-derived kinase ligand to a von Hippel-Lindau E3 ligase ligand through a defined linker architecture. This design preferentially recruits p38α MAP kinase into a productive ternary complex with VHL, enabling ubiquitination and proteasome-mediated degradation. Compared with broad kinase inhibition, SJFα provides a degradation-based tool for examining p38α-specific signaling contributions while minimizing degradation of p38β, p38γ, ERK, or JNK family members. It is useful for pathway-dissection studies requiring selective depletion of p38α protein.

Applications

• PROTAC-Mediated Protein Degradation: SJFα is utilized in research to explore the targeted degradation of specific proteins, enabling the study of protein function and cellular processes. This application aids in dissecting complex biological pathways by selectively removing proteins of interest, offering insights into their roles in disease mechanisms.

• Targeted Degradation in Cancer Research: Researchers employ SJFα to investigate the degradation of oncogenic proteins, facilitating the study of cancer biology. By eliminating proteins that drive tumor growth, SJFα assists in identifying new therapeutic targets and understanding the molecular underpinnings of cancer progression.

• Degradation Pathway Elucidation: SJFα is instrumental in elucidating the mechanisms of the ubiquitin-proteasome system. By targeting proteins for degradation, it allows scientists to map the pathways and interactions involved in protein turnover, advancing knowledge of cellular homeostasis and protein lifecycle management.

• Drug Discovery and Development: In the context of drug discovery, SJFα serves as a tool for validating potential drug targets through PROTAC-mediated degradation. This application supports the identification of novel drug candidates by confirming the functional relevance of target proteins in disease models.

1. Differential PROTAC substrate specificity dictated by orientation of recruited E3 ligase.
Smith, B.E., Wang, S.L., Jaime-Figueroa, S., Harbin, A., Wang, J., Hamman, B.D. and Crews, C.M., 2019. Nature communications, 10(1), pp.1-13.
PROteolysis-TArgeting Chimeras (PROTACs) are hetero-bifunctional molecules that recruit an E3 ubiquitin ligase to a given substrate protein resulting in its targeted degradation. Many potent PROTACs with specificity for dissimilar targets have been developed; however, the factors governing degradation selectivity within closely-related protein families remain elusive. Here, we generate isoform-selective PROTACs for the p38 MAPK family using a single warhead (foretinib) and recruited E3 ligase (von Hippel-Lindau). Based on their distinct linker attachments and lengths, these two PROTACs differentially recruit VHL, resulting in degradation of p38α or p38δ. We characterize the role of ternary complex formation in driving selectivity, showing that it is necessary, but insufficient, for PROTAC-induced substrate ubiquitination. Lastly, we explore the p38δ:PROTAC:VHL complex to explain the different selectivity profiles of these PROTACs. Our work attributes the selective degradation of two closely-related proteins using the same warhead and E3 ligase to heretofore underappreciated aspects of the ternary complex model.
ConcentrationVolumeMass1 mg5 mg10 mg
1 mM0.89 mL4.46 mL8.93 mL
5 mM0.18 mL0.89 mL1.79 mL
10 mM0.09 mL0.45 mL0.89 mL
50 mM0.02 mL0.09 mL0.18 mL

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* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

* Total Molecular Weight:
g/mol
Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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