5-Amino-2-(2,6-dioxopiperidin-3-yl)isoindoline-1,3-dione

 CAS No.: 191732-76-0  Cat No.: BP-200080 4.5  

5-Amino-2-(2,6-dioxopiperidin-3-yl)isoindoline-1,3-dione is a potent E3 ligase ligand commonly utilized in PROTAC (Proteolysis Targeting Chimera) and targeted protein degradation research. Structurally based on thalidomide, this compound selectively binds to cereblon (CRBN), a substrate receptor of the CRL4 E3 ubiquitin ligase complex. Its amine functional group offers versatility for linker attachment, enabling the creation of bifunctional molecules that recruit CRBN to target proteins. This ligand is ideal for developing and optimizing CRBN-based molecular glues and PROTACs, providing a valuable tool for drug discovery and the investigation of undruggable protein targets.

5-Amino-2-(2,6-dioxopiperidin-3-yl)isoindoline-1,3-dione

Structure of 191732-76-0

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Category
Ligand for E3 Ligase
Molecular Formula
C13H11N3O4
Molecular Weight
273.24

* For research and manufacturing use only. Not for human or clinical use.

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Storage
Store at -20°C
Synonyms
5-Aminothalidomide; 1,3-dioxo-2-(2,6-dioxopiperidin-3-yl)-5-aminoisoindoline
InChI Key
IICWMVJMJVXCLY-UHFFFAOYSA-N
InChI
InChI=1S/C13H11N3O4/c14-6-1-2-7-8(5-6)13(20)16(12(7)19)9-3-4-10(17)15-11(9)18/h1-2,5,9H,3-4,14H2,(H,15,17,18)
Canonical SMILES
C1CC(=O)NC(=O)C1N2C(=O)C3=C(C2=O)C=C(C=C3)N

Background Introduction

5-Amino-2-(2,6-dioxopiperidin-3-yl)isoindoline-1,3-dione is a thalidomide analog and a potent ligand targeting the Cereblon (CRBN) E3 ubiquitin ligase. The molecule's unique amino substitution at the 5-position on the isoindoline scaffold enhances its utility as a functionalized building block for next-generation PROTACs (Proteolysis Targeting Chimeras) and molecular glues. Its structural features allow for diverse conjugation strategies, making it a valuable reagent for targeted protein degradation research.

Mechanism

This compound selectively binds to the CRBN subunit of the CUL4-CRBN E3 ubiquitin ligase complex. When incorporated into a bifunctional PROTAC molecule via the accessible 5-amino group, it recruits the E3 ligase to a protein of interest, resulting in ubiquitination and subsequent proteasomal degradation of the target. The exposed amino functionality offers a versatile handle for linker attachment, improving the efficiency and specificity of degrader design.

Applications

5-Amino-2-(2,6-dioxopiperidin-3-yl)isoindoline-1,3-dione is widely used as a functionalized CRBN ligand in PROTAC synthesis, enabling the development of highly selective protein degraders. Its applications extend to:

• Construction of CRBN-based PROTACs for targeted protein degradation
• Structure-activity relationship (SAR) studies and medicinal chemistry optimization
• Synthesis of molecular glues and degrader tool compounds
• Drug discovery, target validation, and development of custom E3 ligase recruiting strategies

This reagent is ideal for both academic and industrial research in the rapidly evolving TPD field.

• High-purity compound verified by HPLC, NMR, and LC-MS
• Consistent batch-to-batch reproducibility with complete QC documentation
• Supplied with COA, MSDS, and analytical data for traceability
• Reliable global shipping with stability-guaranteed packaging
• Dedicated technical support and optional custom synthesis service
• Demonstrates strong binding affinity to CRBN, VHL, or other E3 ligases
• Enables stable E3 ligase recruitment for targeted protein degradation
• High-affinity cereblon (CRBN) ligand core structure enables selective E3 ligase recruitment for targeted protein degradation.
• Versatile functional group allows efficient incorporation into a wide range of PROTAC molecules for drug discovery applications.

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* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

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g/mol
Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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