CHO-Ph-CONH-PEG3-NHBoc is a heterobifunctional PEG-based PROTAC linker featuring an aldehyde-reactive formyl group on one end, a phenylcarboxamide (benzoyl amide) segment, and a short three-unit polyethylene glycol spacer terminated with an N-Boc-protected amine. The linker’s PEG segment provides conformational flexibility and improved aqueous solubility, while the amide and phenyl elements help maintain productive spatial orientation between the two conjugation partners. In PROTAC architectures, the aldehyde functionality can be used to enable controlled coupling to primary amines (e.g., via reductive amination strategies), whereas the Boc-protected amine serves as a protected handle for subsequent deprotection and attachment to a second targeting or recruiting ligand. This combination makes CHO-Ph-CONH-PEG3-NHBoc useful for constructing degraders that require balanced linker length, reduced steric interference, and reliable synthetic modularity for assembling targeted protein degradation probes.
Structure of 1807540-87-9
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CHO-Ph-CONH-PEG3-NHBoc, is designed to provide a flexible polyethylene glycol (PEG) spacer that supports efficient spatial coupling between a ligand and an E3-recruiting or target-binding module. Its ether-rich backbone can improve solubility and conformational adaptability, which are commonly beneficial for targeted protein degradation workflows. The following sections describe its structural features and practical reactivity considerations for assembling PROTAC architectures.
Structure: The linker contains an aromatic phenyl core connected through a carbonyl and an amide linkage, followed by a PEG3 ethylene glycol chain. A terminal Boc-protected amine enables controlled functional-group transformations. Overall, it presents a polar, hydrogen-bonding capable scaffold with ether-rich flexibility.
Reactivity: The Boc-protected amine is suitable for stepwise PROTAC synthesis, enabling deprotection under standard acid-mediated Boc removal conditions to reveal a reactive primary amine. This amine can then participate in amide bond formation with activated carboxylic acids or acyl derivatives using coupling reagents typical for peptide/bioconjugation chemistry. Solvent systems compatible with PEG-containing linkers are generally preferred to maintain solubility and minimize side reactions.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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