Gefitinib-based PROTAC 3

 CAS No.: 2230821-27-7  Cat No.: BP-400058  Purity: ≥95% 4.5  

Gefitinib-based PROTAC 3 is a VHL-recruiting EGFR degrader formed by conjugating an EGFR-binding gefitinib-derived element to a von Hippel-Lindau ligand through a linker. Public sources identify mutant EGFR degradation in cellular systems and report limited degradation of wild-type EGFR under tested conditions, supporting its value as a selectivity-oriented kinase degrader. The gefitinib-derived moiety engages the EGFR kinase domain, while the VHL ligand recruits the VHL-associated E3 ligase complex. Mechanistically, Gefitinib-based PROTAC 3 induces proximity between EGFR and VHL, leading to ubiquitination and proteasome-dependent receptor degradation. It is useful for studying mutant EGFR dependency, kinase-domain degrader selectivity, degradation versus inhibitor occupancy, receptor tyrosine kinase turnover, VHL-based PROTAC optimization, and linker effects in converting established kinase inhibitors into targeted protein degraders.

Gefitinib-based PROTAC 3

Structure of 2230821-27-7

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Category
PROTAC
Molecular Formula
C47H57ClFN7O8S
Molecular Weight
934.51
Appearance
White Solid

* For research and manufacturing use only. Not for human or clinical use.

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Popular Publications Citing BOC Sciences Products
Purity
≥95%
Solubility
Soluble in DMSO
Appearance
White Solid
Storage
Store at 2-8°C for short term (days to weeks) or -20°C for long term (months to years)
Shipping
Room temperature in continental US; may vary elsewhere
IUPACName
(2S,4R)-1-[(2S)-2-[3-[2-[5-[4-(3-chloro-4-fluoroanilino)-7-methoxyquinazolin-6-yl]oxypentoxy]ethoxy]propanoylamino]-3,3-dimethylbutanoyl]-4-hydroxy-N-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl]pyrrolidine-2-carboxamide
Synonyms
N-[3-(2-{[5-({4-[(3-Chloro-4-fluorophenyl)amino]-7-methoxy-6-quinazolinyl}oxy)pentyl]oxy}ethoxy)propanoyl]-3-methyl-L-valyl-(4R)-4-hydroxy-N-[4-(4-methyl-1,3-thiazol-5-yl)benzyl]-L-prolinamide; L-Prolinamide, N-[3-[2-[[5-[[4-[(3-chloro-4-fluorophenyl)amino]-7-methoxy-6-quinazolinyl]oxy]pentyl]oxy]ethoxy]-1-oxopropyl]-3-methyl-L-valyl-4-hydroxy-N-[[4-(4-methyl-5-thiazolyl)phenyl]methyl]-, (4R)-; Iressa-based PROTAC 3; Gefitinib-based Proteolysis-targeting Chimera 3
Boiling Point
1065.6±65.0°C at 760 Torr
Density
1.300±0.06 g/cm3
InChI Key
NICKHWYZMNLEPJ-TZSMONEZSA-N
InChI
InChI=1S/C47H57ClFN7O8S/c1-29-42(65-28-53-29)31-11-9-30(10-12-31)25-50-45(59)38-22-33(57)26-56(38)46(60)43(47(2,3)4)55-41(58)15-18-63-20-19-62-16-7-6-8-17-64-40-23-34-37(24-39(40)61-5)51-27-52-44(34)54-32-13-14-36(49)35(48)21-32/h9-14,21,23-24,27-28,33,38,43,57H,6-8,15-20,22,25-26H2,1-5H3,(H,50,59)(H,55,58)(H,51,52,54)/t33-,38+,43-/m1/s1
SMILES
CC1=C(SC=N1)C2=CC=C(C=C2)CNC(=O)C3CC(CN3C(=O)C(C(C)(C)C)NC(=O)CCOCCOCCCCCOC4=C(C=C5C(=C4)C(=NC=N5)NC6=CC(=C(C=C6)F)Cl)OC)O
Mechanism

Target: Gefitinib-based PROTAC 3 targets mutant EGFR, including exon 19 deletion and L858R variants.

Binding site: Its gefitinib moiety binds the ATP-competitive kinase pocket of mutant EGFR.

Mechanism of action: Gefitinib-based PROTAC 3 is a VHL-recruiting EGFR degrader that links the EGFR inhibitor gefitinib to a von Hippel-Lindau ligand through a linker. The compound induces selective degradation of mutant EGFR in cellular models harboring exon 19 deletion or L858R substitutions, while showing limited degradation of wild-type EGFR under reported conditions. By converting mutant EGFR engagement into ubiquitination and proteasome-dependent protein loss, it supports studies of receptor depletion, downstream signaling durability, mutation-selective degradation, and differences between kinase inhibition and physical removal of oncogenic EGFR.

Applications

• PROTAC-Mediated EGFR Degradation: Gefitinib-based PROTAC 3 is designed to selectively degrade the Epidermal Growth Factor Receptor (EGFR) through the ubiquitin-proteasome system. This application is crucial for studying the effects of EGFR degradation on cellular signaling pathways and cancer cell proliferation, providing insights into novel therapeutic strategies.

• Targeted Degradation in Oncology Research: Utilizing Gefitinib-based PROTAC 3 enables researchers to investigate the potential of targeted protein degradation as a strategy to overcome resistance mechanisms in cancer treatments. By degrading mutant forms of EGFR, this PROTAC offers a unique approach to studying resistance pathways and developing more effective therapeutic interventions.

• Mechanistic Studies of PROTACs: Gefitinib-based PROTAC 3 serves as a valuable tool for elucidating the mechanistic aspects of PROTAC-mediated protein degradation. Researchers can explore the dynamics of PROTAC-induced ubiquitination and subsequent proteasomal degradation, contributing to the understanding of this novel modality in drug discovery.

1. The advantages of targeted protein degradation over inhibition: an RTK case study.
Burslem, G.M., Smith, B.E., Lai, A.C., Jaime-Figueroa, S., McQuaid, D.C., Bondeson, D.P., Toure, M., Dong, H., Qian, Y., Wang, J. and Crew, A.P., 2018. Cell chemical biology, 25(1), pp.67-77.
Proteolysis targeting chimera (PROTAC) technology has emerged over the last two decades as a powerful tool for targeted degradation of endogenous proteins. Herein we describe the development of PROTACs for receptor tyrosine kinases, a protein family yet to be targeted for induced protein degradation. The use of VHL-recruiting PROTACs against this protein family reveals several advantages of degradation over inhibition alone: direct comparisons of fully functional, target-degrading PROTACs with target-inhibiting variants that contain an inactivated E3 ligase-recruiting ligand show that degradation leads to more potent inhibition of cell proliferation and a more durable and sustained downstream signaling response, and thus addresses the kinome rewiring challenge seen with many receptor tyrosine kinase inhibitors. Combined, these findings demonstrate the ability to target receptor tyrosine kinases for degradation using the PROTAC technology and outline the advantages of this degradation-based approach.

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It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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