Azido-PEG3-t-butyl ester is a short, functionalized polyethylene glycol linker bearing a terminal azide group and a protected carboxylate as a tert-butyl ester. Structurally, it provides a flexible three–ethylene glycol unit spacer that can extend and spatially tune the relative orientation of PROTAC components while the azide enables efficient bioorthogonal conjugation (commonly via Cu(I)-catalyzed or strain-promoted azide–alkyne cycloaddition) to install targeting ligands or other reactive handles. The tert-butyl ester serves as a stability-enhancing protecting group for subsequent deprotection to reveal a carboxylic acid for amide or ester coupling, facilitating controlled attachment to warheads or E3 ligase–binding motifs. In targeted protein degradation workflows, this linker is valuable for optimizing linker length and attachment chemistry, improving synthesis modularity, and enabling rapid generation of PROTAC analogs for structure–activity relationship studies.
Structure of 252881-73-5
* For research and manufacturing use only. Not for human or clinical use.
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Azido-PEG3-t-butyl ester is a PEG-based, azide-bearing PROTAC linker designed to enable modular assembly of targeted protein degraders through bioorthogonal click chemistry and subsequent functionalization. Its ether-rich PEG scaffold provides conformational flexibility and improved solubility, while the terminal azide offers a reliable handle for conjugation to ligands or warheads. The t-butyl ester functionality supports controlled downstream derivatization. Detailed structural and reactivity considerations are provided below.
Structure: The linker contains an azide functional group attached to a short polyethylene glycol chain and terminates in a t-butyl ester. It features ether linkages characteristic of PEG, an ester carbonyl, and an azide moiety suitable for cycloaddition. Overall, it is an organic, polar, and chemically stable scaffold.
Reactivity: The azide group is well suited for strain-promoted or copper-catalyzed azide–alkyne cycloaddition to connect PROTAC components under mild conditions. The ester can be transformed via base-promoted deprotection to generate a carboxylate for amide coupling to ligands. Typical workflows use compatible polar organic solvents, inert atmospheres when needed, and standard coupling reagents for stepwise PROTAC synthesis.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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