Amino-PEG2-propionic acid is a short, hydrophilic polyethylene glycol (PEG) linker building block bearing a terminal primary amine and a propionic acid functionality. Structurally, it provides a flexible, water-soluble spacer of approximately two ethylene glycol units, enabling controlled distance and reduced steric interference between a PROTAC warhead and an E3 ligase ligand. In targeted protein degradation constructs, this type of linker is commonly used to tune the effective geometry for ternary complex formation, improve solubility and handling, and mitigate unfavorable local interactions that can impair ubiquitination efficiency. The amine group allows straightforward conjugation or coupling to activated carboxylates, while the carboxylic acid can be used for amide bond formation with complementary linker or ligand fragments. As a modular, PEG-based spacer, it is valuable for systematic linker optimization in PROTAC research, supporting reproducible synthesis of degraders with improved physicochemical properties for in vitro biochemical and cellular studies.
Structure of 791028-27-8
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This amino-PEG2-propionic acid linker is designed for modular PROTAC assembly, providing a hydrophilic, flexible spacer that can improve solubility and help position target-binding warheads for productive ternary complex formation. Its functional handles support reliable conjugation strategies commonly used in targeted protein degradation workflows. The following sections describe the linker’s structural characteristics and practical reactivity considerations in detail.
Structure: The linker combines an amino functionality with a short polyethylene glycol segment and a propionic acid group, enabling formation of stable amide or related linkages. It contains ether linkages typical of PEG chains, plus carboxylic acid and primary amine groups for controlled coupling chemistry.
Reactivity: The propionic acid enables carboxyl-activation approaches such as carbodiimide-mediated coupling to amine-bearing partners, typically using standard coupling reagents and base in polar aprotic solvents. The amino group can also be used for amide formation with activated carboxylic acids. Reaction conditions should be optimized to preserve PEG integrity and minimize side reactions such as hydrolysis of activated intermediates.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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