Bicalutamide is an androgen receptor ligand that binds the receptor ligand-binding domain and can be used as a warhead for androgen receptor PROTAC design. Its antagonist-derived scaffold provides a target-recognition element suitable for connecting to a linker and E3 ligase recruiter. In a degrader molecule, the bicalutamide-derived moiety engages androgen receptor, while the opposite end recruits ubiquitination machinery to promote proximity-driven protein modification. This design aims to convert receptor binding into androgen receptor ubiquitination and proteasome-dependent depletion, enabling studies that go beyond ligand-binding inhibition. Bicalutamide-derived degraders are useful for examining androgen receptor protein function, transcriptional regulation, receptor scaffold activity, ligand-binding domain dependence, and the impact of target degradation on hormone-responsive signaling systems. The ligand also supports research into linker orientation, degrader selectivity, and comparisons among different androgen receptor recognition motifs.
Structure of 90357-06-5
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Target: This ligand targets the androgen receptor (AR) ligand-binding domain in biochemical or cellular target-engagement studies.
Mechanism of Action: Used as the target-protein recognition element, this ligand provides the binding interface for the androgen receptor (AR) ligand-binding domain. In PROTAC design, a derivatizable position on the ligand can be connected through an optimized linker to an E3 ligase ligand, such as a CRBN, VHL, or IAP recruiter, while preserving productive target engagement. The resulting bifunctional molecule brings the androgen receptor (AR) ligand-binding domain into proximity with the recruited E3 ligase, enabling ternary-complex formation. If the complex has favorable geometry and residence time, target lysine ubiquitination is promoted, leading to proteasome-dependent degradation in experimental systems.
Applications• Androgen Receptor PROTAC Targeting: Bicalutamide can be used as a ligand moiety to recruit the androgen receptor (AR) in PROTAC designs, enabling AR ubiquitination and degradation. This supports studies of AR-driven transcriptional programs, domain-specific AR biology, and mechanisms of resistance, including how altered AR stability impacts downstream gene expression.
• AR Degradation Mechanism Studies: Incorporating bicalutamide into PROTACs allows systematic investigation of degradation kinetics, ubiquitin-proteasome dependence, and the contribution of AR conformational states to ternary complex formation. Researchers can compare degradation efficiency versus AR inhibition, mapping how ligand-induced receptor dynamics translate into selective protein loss.
• Resistance and Switch Experiments: Bicalutamide-based PROTACs can be applied to probe resistance mechanisms arising from AR mutations, altered cofactor usage, or changes in AR turnover. By tuning E3 ligase recruitment and linker parameters, experiments can test whether targeted degradation circumvents inhibitor resistance and shifts cellular phenotypes more effectively than occupancy-based approaches.
• Ternary Complex and Specificity Profiling: Bicalutamide provides a rational handle for building PROTACs that form AR–PROTAC–E3 ligase ternary complexes. This enables quantitative evaluation of binding cooperativity, specificity across related nuclear receptors, and the relationship between complex stability and degradation potency, guiding design rules for improved selectivity and reduced off-target degradation.
| ConcentrationVolumeMass | 1 mg | 5 mg | 10 mg |
|---|---|---|---|
| 1 mM | 2.3236 mL | 11.6179 mL | 23.2358 mL |
| 5 mM | 0.4647 mL | 2.3236 mL | 4.6472 mL |
| 10 mM | 0.2324 mL | 1.1618 mL | 2.3236 mL |
| 50 mM | 0.0465 mL | 0.2324 mL | 0.4647 mL |
Bicalutamide is a androgen receptor ligand intended for use as the target-engaging component or reference ligand in PROTAC discovery workflows. Its known small-molecule recognition profile enables rational linker-vector evaluation and comparative degrader design. This molecule is described in detail below.
Structure: The structure of Bicalutamide is characterized by amide/urea/sulfonamide hydrogen-bonding motifs; phenol or alcohol functionality; halogenated aryl/heteroaryl ring system. These features provide defined hydrogen-bonding, hydrophobic, and steric elements that can support affinity retention while enabling analogue-based linker-vector selection.
Reactivity: The hydroxy or phenolic motif can be considered for ether, carbonate, carbamate, or ester linker attachment after SAR verification. For PROTAC construction, the POI ligand can be paired with CRBN ligands such as thalidomide, pomalidomide, or lenalidomide analogues, VHL ligands such as VH032 derivatives, or less common IAP/MDM2/cIAP-recruiting ligands, with alkyl, PEG, piperazine, triazole, or amide linkers screened for ternary-complex formation. In practice, incorporation into PROTACs should begin from derivatives that preserve the reported binding pharmacophore, followed by systematic variation of linker length, polarity, rigidity, and exit-vector geometry to optimize target engagement, E3 recruitment, and cellular degradation readouts.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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