Fmoc-N-amido-PEG6-propionic acid is a PEG-based, amide-linked linker building block bearing an N-terminal Fmoc protecting group and a terminal propionic acid functionality for subsequent conjugation. Structurally, it combines a poly(ethylene glycol) spacer of six ethylene glycol units with an amide linkage, providing a flexible, hydrophilic chain that can reduce steric constraints between a PROTAC’s binding moieties and improve solubility in aqueous buffers. In PROTAC design, such PEG linkers are commonly used to spatially tune the relative positioning of the target-binding ligand and the E3-recruiting element, thereby facilitating productive formation of the ternary complex and supporting efficient ubiquitination-driven degradation. The Fmoc group enables stepwise solid-phase or protected intermediate synthesis, while the carboxylic acid allows coupling to amine- or hydrazide-containing partners using standard peptide/amide coupling chemistries. This product is valuable for constructing modular, experimentally tractable PROTACs and related targeted degradation probes with optimized linker length and physicochemical properties.
Structure of 882847-34-9
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This Fmoc-N-amido-PEG6-propionic acid linker is designed to provide a flexible, hydrophilic polyethylene glycol spacer for constructing PROTACs and related targeted degradation conjugates. Its Fmoc-protected amide functionality enables controlled coupling chemistry, while the PEG segment supports solubility and favorable linker presentation between the ligand-binding moieties. The following sections describe its structure and practical reactivity considerations in PROTAC assembly.
Structure: The linker contains an Fmoc-protected amide linked to a PEG-based spacer and a terminal propionic acid functionality. It features aromatic carbamate character from Fmoc, amide and ether linkages within the PEG chain, and a carboxylic acid for conjugation. Overall, it is a polar, water-compatible scaffold.
Reactivity: The terminal carboxylic acid can be activated for amide-bond formation using standard coupling chemistries commonly employed in PROTAC synthesis. Typical approaches include carbodiimide-mediated activation with an amine-containing partner, often in polar aprotic solvents and under mild base conditions to promote nucleophilic acyl substitution. The Fmoc group is generally removed under base-promoted conditions when deprotection is required prior to coupling, enabling stepwise linker assembly.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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