Fmoc-NH-PEG4-t-butyl ester is a protected polyethylene glycol linker engineered for stepwise synthesis of PROTACs and other targeted protein degradation conjugates. Structurally, it combines an Fmoc-protected amino terminus with a PEG4 ethylene glycol chain and a tert-butyl ester at the opposite end, providing orthogonal functional handles for controlled coupling and subsequent deprotection. In PROTAC construction, the PEG segment serves as a hydrophilic, flexible spacer that can reduce steric clashes and help position the recruiting ligand and the E3-ligase-binding moiety to favor productive ternary complex formation. The Fmoc group enables reliable solid-phase or solution-phase amide bond formation, while the tert-butyl ester can be selectively removed under standard deprotection conditions to reveal a carboxylate for further conjugation. This linker is valuable for generating PROTAC analogs with tunable linker length and polarity, supporting systematic structure–activity relationship studies in targeted degradation research.
Structure of 2148295-94-5
* For research and manufacturing use only. Not for human or clinical use.
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Fmoc-NH-PEG4-t-butyl ester is a polyethylene glycol-based PROTAC linker building block designed to provide conformational flexibility and improved solubility in linker–ligand conjugates. Its protected carboxylate and Fmoc functionality enable reliable stepwise assembly of bifunctional degraders through orthogonal synthetic handles. The ensuing sections describe the linker’s structural features and practical reactivity considerations for constructing PROTACs in a research setting.
Structure: The linker contains an Fmoc-protected amine and an esterified carboxylate capped with a tert-butyl group, connected through a PEG chain that provides ether-rich, flexible segments. It features aromatic carbamate protection, aliphatic ester linkage, and multiple ether oxygen atoms that support polarity and hydrogen-bonding interactions.
Reactivity: The tert-butyl ester is typically cleaved under acid conditions to reveal a carboxylic acid for amide or other coupling reactions. The Fmoc group can be removed under base to expose an amine for stepwise conjugation. PROTAC assembly commonly employs carbodiimide-mediated couplings in polar aprotic solvents, with appropriate bases and coupling additives to drive amide bond formation while minimizing side reactions.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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