JNJ-7706621

 CAS No.: 443797-96-4  Cat No.: BP-300160 4.5  

JNJ-7706621 is a kinase ligand that engages Aurora kinases and CDK-family proteins, providing a broad cell-cycle kinase recognition scaffold for targeted degradation research. Its binding profile makes it useful for exploring degrader designs against mitotic and cell-cycle regulatory kinases. In a PROTAC architecture, the JNJ-7706621-derived moiety would bind the kinase target, while a linker connects it to an E3 ligase recruiter to enable ternary complex formation with ubiquitination machinery. The intended mechanism is kinase ubiquitination and proteasome-dependent depletion, allowing comparison of catalytic inhibition with protein-level removal. JNJ-7706621 is useful for Aurora or CDK degrader exploration, cell-cycle pathway research, kinase selectivity profiling, linker-exit-vector assessment, and studies examining how multitarget kinase ligands influence degrader selectivity and cellular degradation outcomes.

JNJ-7706621

Structure of 443797-96-4

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Ligand for Target Protein
Molecular Formula
C15H12F2N6O3S
Molecular Weight
394.36

* For research and manufacturing use only. Not for human or clinical use.

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Popular Publications Citing BOC Sciences Products
Synonyms
JNJ-7706621; JNJ-7706621; JNJ-7706621
InChI Key
KDKUVYLMPJIGKA-UHFFFAOYSA-N
InChI
InChI=1S/C15H12F2N6O3S/c16-10-2-1-3-11(17)12(10)13(24)23-14(18)21-15(22-23)20-8-4-6-9(7-5-8)27(19,25)26/h1-7H,(H2,19,25,26)(H3,18,20,21,22)
SMILES
C1=CC(=C(C(=C1)F)C(=O)N2C(=NC(=N2)NC3=CC=C(C=C3)S(=O)(=O)N)N)F
Mechanism

Target: This ligand targets cyclin-dependent kinases and Aurora kinases in biochemical or cellular target-engagement studies.

Mechanism of Action: Used as the target-protein recognition element, this ligand provides the binding interface for cyclin-dependent kinases and Aurora kinases. In PROTAC design, a derivatizable position on the ligand can be connected through an optimized linker to an E3 ligase ligand, such as a CRBN, VHL, or IAP recruiter, while preserving productive target engagement. The resulting bifunctional molecule brings cyclin-dependent kinases into proximity with the recruited E3 ligase, enabling ternary-complex formation. If the complex has favorable geometry and residence time, target lysine ubiquitination is promoted, leading to proteasome-dependent degradation in experimental systems.

Applications

• E3 Ligase Recruitment Studies: JNJ-7706621 can be used as a PROTAC ligand to recruit an E3 ubiquitin ligase toward a chosen target protein. Researchers can optimize ternary complex formation and ubiquitination efficiency by varying linker length, attachment position, and PROTAC stoichiometry to map degradation potency and mechanistic requirements.

• Targeted Degradation Profiling: In PROTAC designs incorporating JNJ-7706621, investigators can evaluate how effectively the target protein is degraded across cellular contexts. Quantitative time-course studies using immunoblotting or proteomics can distinguish rapid ubiquitin-dependent loss from transient inhibition, informing degradation kinetics and pathway dependence.

• Mechanism of Action Mapping: JNJ-7706621-enabled PROTACs support systematic interrogation of degradation mechanisms, including dependence on ubiquitination, proteasome activity, and cellular trafficking. Using inhibitors such as proteasome blockers or E1/E3 pathway perturbations, researchers can confirm whether observed target loss is driven by ubiquitin-mediated proteolysis.

• Structure–Activity Relationship Optimization: JNJ-7706621 can serve as a modular component in PROTAC structure–activity relationship (SAR) campaigns. By systematically modifying linker chemistry and length, and by testing alternative conjugation geometries, teams can correlate changes in binding orientation with ternary complex stability and degradation efficacy.

• Proteome-Wide Specificity Assessment: PROTACs built with JNJ-7706621 can be used to assess degradation specificity beyond the intended target. Targeted and global proteomics can identify off-target degradation events, enabling refinement of ligand selection and linker design to minimize unintended protein loss while maintaining strong on-target degradation.

1.Synthesis and evaluation of N-acyl sulfonamides as potential prodrugs of cyclin-dependent kinase inhibitor JNJ-7706621.
Huang S1, Connolly PJ, Lin R, Emanuel S, Middleton SA. Bioorg Med Chem Lett. 2006 Jul 15;16(14):3639-41. Epub 2006 May 6.
A novel prodrug strategy for cyclin-dependent kinase inhibitor JNJ-7706621 has been explored. Through N-acylation of a sulfonamide substituent, tails containing different solubilizing groups (amino, carboxyl, alkoxyl, and hydroxyl) were attached to JNJ-7706621. Most of the prodrugs exhibited good aqueous solubility and the N-acyl groups on the sulfonamide were metabolically cleaved to generate active drug in rat PK study.
2.Active and passive tumor targeting of a novel poorly soluble cyclin dependent kinase inhibitor, JNJ-7706621.
Danhier F1, Ucakar B, Magotteaux N, Brewster ME, Préat V. Int J Pharm. 2010 Jun 15;392(1-2):20-8. doi: 10.1016/j.ijpharm.2010.03.018. Epub 2010 Mar 11.
The anti-cancer cyclin dependent kinase (CDK) inhibitors are poorly soluble drugs. The aims of this work were (i) to formulate a novel CDK inhibitor, JNJ-7706621, in polymeric micelles and nanoparticles, (ii) to compare passive and active targeting on tumor growth and (iii) to evaluate the potential synergy of JNJ-7706621 with Paclitaxel. Therefore, JNJ-7706621 was encapsulated in self-assembling diblock copolymers made up of epsilon-caprolactone (CL) and trimethylene carbonate (TMC) (PEG-p-(CL-co-TMC)) polymeric micelles and in (poly(lactide-co-glycolide)) (PLGA)-based PEGylated nanoparticles (passive targeting) as well as in RGD-grafted nanoparticles (active targeting). In vivo, the transplantable liver tumor growth was more decreased by active targeting with RGD-grafted nanoparticles than by passive targeting with micelles or ungrafted nanoparticles. Moreover, a synergy between JNJ-7706621 and Paclitaxel was demonstrated. Therefore, active targeting of JNJ-7706621-loaded nanocarriers may be considered as an effective anti-cancer drug delivery system for cancer chemotherapy, particularly in combination with Paclitaxel.
3.Growth suppression and mitotic defect induced by JNJ-7706621, an inhibitor of cyclin-dependent kinases and aurora kinases.
Matsuhashi A1, Ohno T, Kimura M, Hara A, Saio M, Nagano A, Kawai G, Saitou M, Takigami I, Yamada K, Okano Y, Shimizu K. Curr Cancer Drug Targets. 2012 Jul;12(6):625-39.
Aurora kinases and cyclin-dependent kinases, which play critical roles in the cell cycle and are frequently overexpressed in a variety of tumors, have been suggested as attractive targets for cancer therapy. JNJ-7706621, a recently identified dual inhibitor of these kinases, is reported to induce cell cycle arrest, endoreduplication, and apoptosis. In the present study, we further investigated the molecular mechanisms underlying these effects. The inhibitor arrested various cells at G2 phase at low concentration, and at both G1 and G2 phases at high concentration. JNJ-7706621 did not prevent localization of Aurora A to the spindle poles, but did inhibit other centrosomal proteins such as TOG, Nek2, and TACC3 in early mitotic phase. Similarly, the drug did not prevent localization of Aurora B to the kinetochore, but did inhibit other chromosomal passenger proteins such as Survivin and INCENP. In the cells exposed to JNJ-7706621 after nocodazole release, Aurora B, INCENP, and Survivin became relocated to the peripheral region of chromosomes, but Plk1 and Prc1 were localized on microtubules in later mitotic phase.
ConcentrationVolumeMass1 mg5 mg10 mg
1 mM2.5358 mL12.6788 mL25.3575 mL
5 mM0.5072 mL2.5358 mL5.0715 mL
10 mM0.2536 mL1.2679 mL2.5358 mL
50 mM0.0507 mL0.2536 mL0.5072 mL

JNJ-7706621 is a kinase ligand scaffold that can guide CDK/Aurora-family degrader research. Linker placement should focus on solvent-facing basic or peripheral vectors in validated analogs.

Structure: JNJ-7706621 is a kinase inhibitor scaffold containing a purine-like or fused heteroaryl core, halogenated aryl substitution, and a piperazine-containing solubilizing side chain. The structure presents multiple nitrogen atoms and a basic tertiary amine suitable for polarity control.

Reactivity: For CDK/Aurora-family degrader exploration, linker installation should preserve the heteroaryl kinase-binding core and focus on solvent-exposed piperazine or peripheral aryl vectors. Alkyl, PEG, amide, carbamate, or tertiary-amine-compatible linkers may be paired with CRBN, VHL, or IAP ligands. Because the parent molecule lacks a dedicated free acid or primary amine handle, controlled PROTAC synthesis should use a linker-ready analog with experimentally confirmed target engagement.

Hi, does it soluble in water?

No, it is not soluble in water.

14/3/2021

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