Methyltetrazine-PEG5-NHS ester is a heterobifunctional PEG-based linker that combines a methyltetrazine reactive handle with an N-hydroxysuccinimide (NHS) ester for amide coupling. Structurally, it comprises a short polyethylene glycol spacer that provides aqueous solubility and spatial flexibility, linking the methyltetrazine moiety to an NHS-activated carboxyl group. In PROTAC and targeted degradation workflows, the NHS ester enables efficient conjugation to primary amines on ligands (e.g., protein-binding warheads or solubilizing tags), while the methyltetrazine group serves as a bioorthogonal partner for rapid inverse-electron-demand Diels–Alder ligation with trans-cyclooctene/strained-alkene handles. This dual reactivity allows modular assembly of degradation constructs under mild conditions, facilitating controlled stoichiometry and minimizing off-target reactions. The PEG spacer helps tune linker length and conformational freedom, which can improve productive ternary complex formation and degradation efficiency in experimental designs.
Structure of 1802907-92-1
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Methyltetrazine-PEG5-nhs ester is a bifunctional PROTAC linker designed to integrate a methyltetrazine handle for bioorthogonal assembly with an NHS ester for efficient coupling to primary amines on targeting ligands. Its PEG-based spacer supports favorable solubility and conformational flexibility, which can improve conjugation outcomes and maintain productive ternary complex formation. The detailed structural and reactivity characteristics are provided below.
Structure: The molecule contains a methyltetrazine moiety linked to a polyethylene glycol chain terminated by an N-hydroxysuccinimide ester. It features an aromatic heterocycle, an ether-rich PEG segment, and an acyl–oxygen leaving group characteristic of NHS esters, contributing to aqueous compatibility and controlled reactivity toward amines.
Reactivity: The NHS ester reacts with primary amines via nucleophilic acyl substitution to form stable amide bonds under mildly basic aqueous buffer conditions. The methyltetrazine group participates in inverse-electron-demand Diels–Alder bioorthogonal chemistry with appropriate strained dienes, enabling stepwise PROTAC assembly. Typical coupling workflows use amine-containing ligands, buffered solvents, and temperature control to preserve linker integrity while maximizing coupling efficiency.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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