Methyltetrazine-PEG5-nhs ester

 CAS No.: 1802907-92-1  Cat No.: BP-500311  Purity: 95% 4.5  

Methyltetrazine-PEG5-NHS ester is a heterobifunctional PEG-based linker that combines a methyltetrazine reactive handle with an N-hydroxysuccinimide (NHS) ester for amide coupling. Structurally, it comprises a short polyethylene glycol spacer that provides aqueous solubility and spatial flexibility, linking the methyltetrazine moiety to an NHS-activated carboxyl group. In PROTAC and targeted degradation workflows, the NHS ester enables efficient conjugation to primary amines on ligands (e.g., protein-binding warheads or solubilizing tags), while the methyltetrazine group serves as a bioorthogonal partner for rapid inverse-electron-demand Diels–Alder ligation with trans-cyclooctene/strained-alkene handles. This dual reactivity allows modular assembly of degradation constructs under mild conditions, facilitating controlled stoichiometry and minimizing off-target reactions. The PEG spacer helps tune linker length and conformational freedom, which can improve productive ternary complex formation and degradation efficiency in experimental designs.

Methyltetrazine-PEG5-nhs ester

Structure of 1802907-92-1

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PROTAC Linker
Molecular Formula
C24H31N5O9
Molecular Weight
533.53

* For research and manufacturing use only. Not for human or clinical use.

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Purity
95%
Solubility
Poorly soluble
Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
Shipping
Room temperature in continental US; may vary elsewhere.
IUPACName
(2,5-dioxopyrrolidin-1-yl) 3-[2-[2-[2-[2-[4-(6-methyl-1,2,4,5-tetrazin-3-yl)phenoxy]ethoxy]ethoxy]ethoxy]ethoxy]propanoate
Synonyms
Methyltetrazine-PEG5-NHS ester; 2,5-dioxopyrrolidin-1-yl 1-(4-(6-methyl-1,2,4,5-tetrazin-3-yl)phenoxy)-3,6,9,12-tetraoxapentadecan-15-oate
InChI Key
SWSUSQWZOPGVKP-UHFFFAOYSA-N
InChI
InChI=1S/C24H31N5O9/c1-18-25-27-24(28-26-18)19-2-4-20(5-3-19)37-17-16-36-15-14-35-13-12-34-11-10-33-9-8-23(32)38-29-21(30)6-7-22(29)31/h2-5H,6-17H2,1H3
SMILES
CC1=NN=C(N=N1)C2=CC=C(C=C2)OCCOCCOCCOCCOCCC(=O)ON3C(=O)CCC3=O

Methyltetrazine-PEG5-nhs ester is a bifunctional PROTAC linker designed to integrate a methyltetrazine handle for bioorthogonal assembly with an NHS ester for efficient coupling to primary amines on targeting ligands. Its PEG-based spacer supports favorable solubility and conformational flexibility, which can improve conjugation outcomes and maintain productive ternary complex formation. The detailed structural and reactivity characteristics are provided below.

Structure: The molecule contains a methyltetrazine moiety linked to a polyethylene glycol chain terminated by an N-hydroxysuccinimide ester. It features an aromatic heterocycle, an ether-rich PEG segment, and an acyl–oxygen leaving group characteristic of NHS esters, contributing to aqueous compatibility and controlled reactivity toward amines.

Reactivity: The NHS ester reacts with primary amines via nucleophilic acyl substitution to form stable amide bonds under mildly basic aqueous buffer conditions. The methyltetrazine group participates in inverse-electron-demand Diels–Alder bioorthogonal chemistry with appropriate strained dienes, enabling stepwise PROTAC assembly. Typical coupling workflows use amine-containing ligands, buffered solvents, and temperature control to preserve linker integrity while maximizing coupling efficiency.

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Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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