1-Azido-4,7,10-trioxa-13-tridecanamine
1-Azido-4,7,10-trioxa-13-tridecanamine is a bifunctional, polyethylene-glycol–like aliphatic linker bearing a terminal primary amine and an azide handle, with three ether units embedded along a flexible thirteen-carbon chain. The combination of a reactive azide and a nucleophilic amine enables orthogonal conjugation strategies commonly used in PROTAC synthesis: the azide can be selectively engaged via Cu(I)-catalyzed azide–alkyne cycloaddition or related click chemistries to attach to an alkyne-functional warhead or E3-ligase ligand, while the amine can be used for amide coupling or reductive amination to introduce the linker into carboxyl- or aldehyde-bearing partners. Its ether-rich segment increases conformational flexibility and can help reduce steric constraints between binding domains, supporting productive formation of ternary complexes. As a modular spacer, this linker is valuable for systematically tuning linker length and polarity in targeted protein degradation workflows, facilitating SAR-driven optimization of degrader potency and selectivity.
Structure of 1162336-72-2
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1-Azido-4,7,10-trioxa-13-tridecanamine, provides a flexible, ether-rich spacer terminating in a primary amine and an azide handle. Its design supports modular assembly of targeted protein degraders by enabling orthogonal conjugation strategies that are commonly used to connect ligands to E3-recruiting modules. The ether segments can enhance solubility and conformational adaptability, while the azide functionality supports bioorthogonal coupling approaches. The following points describe its structure and practical reactivity for PROTAC construction in detail below.
Structure: The linker contains an azide group and a primary amine at opposite ends, connected through a chain incorporating multiple ether linkages. It features polar heteroatoms, flexible C–N and C–O connectivity, and a terminal azide suitable for click-type transformations, contributing to favorable handling and conjugation compatibility.
Reactivity: The azide enables copper-catalyzed azide–alkyne cycloaddition or strain-promoted azide–alkene/alkyne coupling under conditions compatible with many ligand chemistries. The primary amine can be used for amide or urea formation via activated carboxylic acids or isocyanate/activated carbonate intermediates. Typical PROTAC assembly employs anhydrous or buffered organic solvents with appropriate bases, while protecting-group strategy and chemoselectivity are critical to preserve sensitive functional groups during sequential coupling steps.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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