3,6,9,12-Tetraoxapentadec-14-yn-1-ol is a polyethylene glycol–like, oxygen-rich linker featuring a terminal propargyl alcohol functionality and an internal alkyne, providing a rigid yet flexible spacer for PROTAC architectures. The multiple ether oxygens increase polarity and conformational adaptability, which can improve solubility and help position the two binding elements within the productive geometry required for ubiquitin ligase recruitment and ternary complex formation. The terminal hydroxyl and alkyne enable orthogonal functionalization strategies, such as conversion to coupling handles (e.g., carbonate/ester derivatives) and subsequent click-type conjugation or crosslinking to warheads and E3 ligase ligands under standard synthetic workflows. In targeted protein degradation research, this linker is valuable for tuning linker length, hydrophilicity, and spatial orientation between ligands, thereby facilitating systematic optimization of degradation potency and selectivity while supporting modular synthesis of PROTAC variants.
Structure of 87450-10-0
* For research and manufacturing use only. Not for human or clinical use.
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3,6,9,12-Tetraoxapentadec-14-yn-1-ol, is designed to provide a flexible, oxygen-rich scaffold that can be incorporated into PROTAC architectures to spatially tune ternary complex formation. Its ether-rich framework and terminal propargyl alcohol functionality support modular conjugation strategies used to assemble targeted protein degraders. The subsequent sections describe its structural features and practical reactivity considerations for PROTAC construction.
Structure: The molecule contains a long, ether-rich chain with multiple oxygen atoms and a terminal alkynyl alcohol motif. It features C–O ether linkages, a carbon–carbon triple bond, and an alcohol functional group, yielding a polar, conformationally adaptable linker with hydrogen-bonding capability that can influence PROTAC geometry.
Reactivity: The terminal alkynyl alcohol enables common PROTAC linker coupling workflows, including alcohol functionalization followed by substitution or ester/ether formation with complementary electrophiles. For alkyne-bearing intermediates, conditions that preserve the carbon–carbon triple bond are preferred. Typical approaches use mild base-mediated derivatizations in compatible organic solvents; catalysts are selected only when required for specific coupling chemistries, while protecting-group strategies may be used to control chemoselectivity during multi-step assembly.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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