Boc-Aminooxy-PEG4-CH2-Boc is a heterobifunctional PEG linker incorporating a Boc-protected aminooxy group at one terminus and a Boc-protected carboxylate at the other, connected through a tetraethylene glycol spacer. The aminooxy functionality, upon Boc deprotection, provides a nucleophilic handle for chemoselective oxime ligation with aldehyde- or ketone-bearing molecules, forming stable oxime bonds under physiological conditions without requiring cytotoxic catalysts. This bioorthogonal conjugation strategy is particularly valuable for site-specific modification of protein ligands or E3 ligase-recruiting moieties that possess or can be engineered to display carbonyl groups. The distal Boc-protected carboxylate, upon deprotection, reveals a free carboxylic acid suitable for amide coupling with primary amine-containing ligands. The PEG spacer confers hydrophilicity and conformational flexibility, both critical parameters in PROTAC design that influence cell permeability, solubility, and the spatial orientation required for productive ternary complex assembly. Researchers utilize this linker to leverage the orthogonal reactivity of aminooxy and carboxylate groups, enabling sequential and chemoselective installation of both the target protein-binding ligand and the E3 ubiquitin ligase-recruiting moiety in a controlled and modular fashion.
Structure of 2062663-63-0
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This doubly protected oligoether linker provides latent aminooxy and carboxyl functions for sequential, chemoselective assembly. After controlled deprotection, it can connect a carbonyl-bearing ligand and an amine-bearing partner while maintaining a flexible PROTAC spacer. Its structural and reactive features follow.
Structure: The linker comprises an oligoether chain capped by a carbamate-protected aminooxy group and a tert-butyl acetate. Ether bonds confer conformational flexibility, while carbamate and ester carbonyls protect nucleophilic aminooxy and acidic carboxyl functionality during intermediate synthetic operations.
Reactivity: Acidic deprotection releases the aminooxy group and carboxylic acid, although selective exposure may require carefully tuned conditions or a planned reaction sequence. The aminooxy terminus forms oximes with aldehydes or ketones under mildly acidic aqueous-organic conditions. The carboxyl terminus can undergo carbodiimide- or uronium-mediated amidation with an amine in a polar aprotic solvent and a nonnucleophilic base.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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