BCN-PEG4-NHS ester
BCN-PEG4-NHS ester is a bifunctional polyethylene glycol linker that combines a bicyclononyne (BCN) strained-alkyne handle with a terminal N-hydroxysuccinimide (NHS) ester for amide-bond formation. Structurally, it is a short PEG chain of four ethylene glycol units that provides aqueous solubility and spacing between conjugated partners, while the BCN moiety enables rapid, catalyst-free strain-promoted azide–alkyne cycloaddition (SPAAC) with azide-functionalized molecules. In PROTAC design, this linker can be used to install the BCN group onto one component (e.g., a targeting ligand or E3 ligase recruiter bearing an azide), and the NHS ester can be used to couple the PEG spacer to primary amines on proteins, peptides, or lysine-containing ligands, improving conjugation efficiency and reducing steric hindrance. Its value in targeted protein degradation research lies in providing modular, orthogonal bioconjugation for assembling multi-component degraders under mild conditions.
Structure of 1702356-19-1
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* For research and manufacturing use only. Not for human or clinical use.
| Size | Price | Stock | Quantity |
|---|---|---|---|
| 50 mg | $629 | In stock |
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BCN-PEG4-NHS ester is a bifunctional PEG-based linker designed for efficient conjugation in targeted protein degradation workflows. Its NHS-ester handle enables robust coupling to primary amines on ligands, while the BCN (bicyclononyne) moiety supports strain-promoted bioorthogonal click reactions for attaching the conjugate to complementary partners. This combination improves modular assembly, preserves solubility, and facilitates the construction of PROTACs with controlled linker geometry; detailed structural and reactivity considerations are provided below.
Structure: The molecule comprises a BCN cyclooctyne core connected through a polyethylene glycol spacer to an activated N-hydroxysuccinimide ester. It contains an NHS ester carbonyl, ether linkages within the PEG chain, and a strained alkyne suitable for cycloaddition. The PEG segment confers aqueous compatibility, while the ester provides electrophilic reactivity toward amines.
Reactivity: The NHS ester reacts with primary amines under mild, aqueous-compatible conditions to form stable amide bonds, typically using buffering systems that maintain the ester’s reactivity. The BCN group undergoes strain-promoted azide–alkyne cycloaddition with azide-bearing partners without added catalysts. For PROTAC assembly, sequential coupling (amine-to-NHS, then BCN click) is commonly used to minimize cross-reactivity and to preserve functional group integrity.
What are the main activities of endo-BCN-PEG4-NHS ester ?
Endo-BCN-PEG4-NHS ester is a PROTAC linker belonging to the PEG class. It can be used to synthesize PROTAC molecules.
30/7/2016
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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