Bis-PEG21-NHS ester is a bifunctional, polyethylene glycol–based linker featuring two terminal N-hydroxysuccinimide (NHS) ester groups that enable efficient amide-bond formation with primary amines on targeting ligands and/or E3 ligase–binding moieties. Structurally, it provides a long, flexible PEG spacer that improves aqueous solubility, reduces nonspecific hydrophobic interactions, and helps maintain productive relative orientation between conjugated partners. In PROTAC design, this linker mediates covalent conjugation by reacting the NHS esters with lysine residues or engineered amine handles, yielding stable amide-linked constructs while the PEG chain length enhances mobility to support formation of the ternary complex between the target protein and the recruited E3 ligase. Its value for targeted protein degradation research lies in facilitating modular assembly of multicomponent degraders with tunable linker architecture, improved handling, and often enhanced bioconjugation efficiency for structure–activity relationship studies.
Structure of 2221948-98-5
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Bis-PEG21-NHS ester, is designed to enable efficient conjugation of two amine-bearing ligands through NHS-ester chemistry, supporting the assembly of bifunctional degraders. Its PEG-based architecture provides a hydrophilic, flexible spacer that can improve solubility and help tune effective intramolecular positioning between the target-binding and E3-recruiting modules. The detailed structural and reactivity characteristics are provided below.
Structure: Bis-PEG21-NHS ester contains a PEG-based, flexible linker bearing two N-hydroxysuccinimide (NHS) ester functional groups. The molecule features amide-forming reactive acyl–oxygen bonds and ether linkages within the PEG chain, promoting hydrophilicity and conformational mobility relevant to PROTAC geometry.
Reactivity: The NHS esters react with primary amines to form stable amide bonds via nucleophilic acyl substitution. Suitable coupling is typically performed under mildly basic conditions to activate amine nucleophilicity while preserving NHS ester integrity. Common approaches use aqueous or mixed aqueous organic solvents, with careful control of pH and avoidance of competing nucleophiles such as primary amine-containing buffers. Catalysts are generally unnecessary; the process relies on the intrinsic electrophilicity of NHS esters.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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