Bromo-PEG3-t-butyl ester is a heterobifunctional PEG-based linker featuring a terminal bromide handle for nucleophilic substitution and a protected carboxylate as a tert-butyl ester for controlled coupling chemistry. The PEG3 chain provides a flexible, hydrophilic spacer that helps reduce steric interference between the two PROTAC-relevant moieties and can improve solubility and effective reach of the conjugated ligands in aqueous media. In PROTAC design, the bromide enables attachment of the linker to nucleophilic sites on targeting or E3-ligase-binding fragments (for example, via substitution with appropriate nucleophiles), while the tert-butyl ester can be selectively deprotected or transformed to introduce a carboxylate for subsequent amide or ester bond formation. This linker is therefore useful for constructing well-defined conjugates that maintain productive geometry for ternary complex formation, supporting systematic optimization of degradation potency and selectivity in targeted protein degradation research.
Structure of 782475-37-0
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Bromo-PEG3-t-butyl ester is a PEG-based, bromo-functional linker designed for modular construction of PROTACs, enabling efficient conjugation between a ligand and an E3-recruiting module or target-binding moiety. Its polyethylene glycol segment provides conformational flexibility and improved solubility, while the bromo handle supports reliable electrophilic substitution strategies. The tert-butyl ester offers a protected carboxyl functionality that can be selectively unmasked when required. Detailed structural and reactivity considerations are provided below.
Structure: The linker comprises a polyethylene glycol chain bearing a terminal bromide and a tert-butyl ester group. It contains ether linkages within the PEG backbone, an alkyl bromide electrophile, and an ester carbonyl, providing a balance of polarity, flexibility, and chemical stability under standard organic conditions.
Reactivity: The bromo terminus is suitable for nucleophilic substitution reactions with appropriate nucleophiles (for example, amines or carboxylates) to form C–N or C–O bonds during PROTAC assembly. The tert-butyl ester can be used as a protected carboxyl equivalent and later converted to the free acid under established deprotection conditions. Typical coupling sequences employ polar aprotic solvents and base-mediated activation, while maintaining compatibility with sensitive ligands.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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