m-PEG2-amido-Ph-NH2 is a short, functionalized polyethylene glycol (PEG) linker bearing an anilide (amido) connection to a phenyl ring and a terminal primary amine for subsequent conjugation. Structurally, it provides a flexible, hydrophilic spacer of limited length that can reduce steric interference between the two binding elements of a PROTAC while maintaining an appropriate spatial relationship for effective ternary-complex formation. In PROTAC design, this linker is used to connect a ligand-derived warhead to an E3-recruiting module (or to an intermediate handle) through amide or amine-compatible coupling chemistries, thereby positioning the recruited target protein and the ubiquitin ligase in proximity to enable ubiquitination and downstream proteasomal degradation. Its value for targeted protein degradation research lies in enabling systematic linker-length and attachment-point optimization with improved aqueous solubility and tunable geometry, facilitating experimental evaluation of degradation potency and selectivity.
Structure of 1284417-66-8
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m-PEG2-amido-Ph-NH2, is designed to provide a flexible polyethylene glycol-based spacer coupled to an aniline functionality for efficient conjugation between targeting and E3-ligase-recruiting modules. Its ether-rich, hydrophilic character can improve solubility and mitigate steric constraints, supporting reliable construction of bifunctional degraders. The linker’s amide-bearing aromatic core enables robust, widely used coupling strategies, and the subsequent sections describe its structure and practical reactivity for PROTAC assembly in detail below.
Structure: The linker contains an aniline (primary amine) attached to a substituted phenyl ring bearing an amide-linked PEG segment. It features ether linkages within the PEG chain, aromatic C–C bonds, and an amide linkage capable of hydrogen bonding, contributing to enhanced hydrophilicity and conformational flexibility.
Reactivity: The primary amine enables nucleophilic acyl substitution or amide-bond formation with activated carboxylic acid derivatives commonly used in PROTAC synthesis, such as activated esters or acid chlorides. For efficient coupling, researchers typically employ base and polar aprotic solvents under mild, anhydrous conditions to suppress side reactions. The amine can also participate in carbamate or urea-forming routes when complementary activated electrophiles are used, following standard PROTAC linker-conjugation mechanisms.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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