DBCO-C-PEG1

 CAS No.: 2377004-09-4  Cat No.: BP-501011  Purity: 98% 4.5  

DBCO-C-PEG1 is a dibenzocyclooctyne (DBCO)–functionalized, short polyethylene glycol linker designed for copper-free strain-promoted azide–alkyne cycloaddition (SPAAC). Structurally, it comprises a DBCO cyclooctyne moiety connected through a brief PEG segment, providing a flexible, hydrophilic spacer that helps present the reactive handle away from bulky conjugates. In PROTAC and targeted degradation workflows, this linker enables efficient, bioorthogonal conjugation of azide-bearing components (e.g., ligand–recruiter or ligand–warhead constructs) to generate well-defined heterobifunctional degraders under mild conditions without copper catalysis. The PEG spacer can improve solubility and reduce steric interference, which is important for maintaining productive ternary complex formation. As a modular click handle, DBCO-C-PEG1 is valuable for assembling PROTACs with controlled attachment geometry, facilitating systematic structure–activity studies and rapid iteration of linker architectures in targeted protein degradation research.

DBCO-C-PEG1

Structure of 2377004-09-4

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Category
PROTAC Linker
Molecular Formula
C₂₂H₂₂N₂O₃
Molecular Weight
362.42

* For research and manufacturing use only. Not for human or clinical use.

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Purity
98%
Solubility
DMSO, DCM, DMF
Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
Shipping
Room temperature in continental US; may vary elsewhere.
IUPACName
4-(2-azatricyclo[10.4.0.04,9]hexadeca-1(16),4,6,8,12,14-hexaen-10-yn-2-yl)-N-(3-hydroxypropyl)-4-oxobutanamide
Synonyms
DBCO-C3-alcohol
InChI Key
DKPIBDQFMSUYSD-UHFFFAOYSA-N
InChI
InChI=1S/C22H22N2O3/c25-15-5-14-23-21(26)12-13-22(27)24-16-19-8-2-1-6-17(19)10-11-18-7-3-4-9-20(18)24/h1-4,6-9,25H,5,12-16H2,(H,23,26)
SMILES
C1C2=CC=CC=C2C#CC3=CC=CC=C3N1C(=O)CCC(=O)NCCCO

This DBCO-C-PEG1 linker is designed for efficient conjugation in PROTAC workflows that require robust, bioorthogonal attachment handles. The combination of a DBCO click moiety with a short polyethylene glycol segment supports reliable coupling to targeting ligands and facilitates the construction of degraders with improved conjugation flexibility. The linker’s use in PROTAC technology enables modular assembly under conditions compatible with sensitive biomolecule conjugates;

Structure: The linker contains a DBCO (dibenzocyclooctyne) cyclooctyne core for strain-promoted cycloaddition, connected to a short PEG chain that provides hydrophilicity and conformational flexibility. It features aromatic rings, ether linkages within the PEG segment, and a strained alkyne suitable for rapid bioorthogonal reactions.

Reactivity: DBCO-C-PEG1 participates in strain-promoted azide–alkyne cycloaddition with azide-bearing partners, enabling catalyst-free conjugation. Typical conditions use aqueous or mixed aqueous buffers at neutral pH, with mild temperatures to preserve ligand integrity. The mechanism proceeds via a cycloaddition between the strained cyclooctyne and an azide, forming a stable triazole linkage; no copper catalyst is required, which helps minimize side reactions during PROTAC assembly.

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* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

* Total Molecular Weight:
g/mol
Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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