Hydroxy-PEG4-t-butyl ester is a polyethylene glycol (PEG) linker featuring a terminal hydroxyl group and a protected carboxyl functionality masked as a tert-butyl ester. Structurally, it provides a flexible, hydrophilic chain of moderate length that can be used to spatially separate a targeting ligand from an E3-recruiting moiety or other functional groups while reducing nonspecific hydrophobic interactions. In PROTAC architectures, such PEG-based linkers help tune the effective geometry and distance between binding elements, thereby facilitating productive ternary complex formation and improving the likelihood of ubiquitination-driven degradation. The tert-butyl ester serves as a chemically addressable handle that can be selectively deprotected under appropriate conditions to enable subsequent amide or ester coupling to generate final conjugates. As a versatile, research-grade linker, it is valuable for systematic optimization of linker length, polarity, and conjugation chemistry in targeted protein degradation studies.
Structure of 518044-32-1
* For research and manufacturing use only. Not for human or clinical use.
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This Hydroxy-PEG4-t-butyl ester linker is designed to provide a hydrophilic polyethylene glycol segment while incorporating a protected carboxyl functionality suitable for PROTAC assembly. Its PEG-based architecture can enhance aqueous compatibility and tune linker flexibility, supporting efficient conjugation between ligand moieties. The protected ester enables controlled late-stage functionalization, facilitating reproducible synthesis workflows; detailed structural and reactivity considerations are provided below.
Structure: The linker contains a polyethylene glycol chain bearing a terminal hydroxy group and a t-butyl ester-protected carboxylate. It features ether linkages within the PEG segment, an ester linkage at the protected terminus, and a hydroxyl handle for orthogonal coupling strategies. Overall, it is polar and conformationally flexible.
Reactivity: The t-butyl ester can be selectively deprotected under acid-promoted conditions to reveal a carboxylic acid for amide or ester bond formation. Coupling to amine-bearing ligands is commonly performed via carbodiimide-mediated activation in suitable polar solvents, often with base to promote nucleophilic acyl substitution. The hydroxy group can be used for further derivatization using standard activation chemistries, enabling modular PROTAC construction.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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