PEG3-methylamine is a short polyethylene glycol–based linker building block featuring a terminal methylamine group that can be used for site-directed conjugation in PROTAC and related targeted protein degradation constructs. Structurally, it provides a flexible, hydrophilic three–ethylene glycol unit spacer that helps tune solubility and reduce steric interference between the ligand-binding moieties of a degrader. The primary amine enables chemoselective coupling to activated carboxylates, activated esters, or appropriately functionalized electrophiles, allowing researchers to connect this spacer to a target-binding ligand and/or an E3 ligase ligand through stable amide or related linkages. In PROTAC design, such PEG-based spacers are commonly employed to optimize linker length, conformational freedom, and overall physicochemical properties, which can improve productive ternary complex formation and degradation efficiency. As a practical modular reagent, PEG3-methylamine supports systematic linker engineering and rapid synthesis of analog libraries for mechanistic and structure–activity relationship studies.
Structure of 282551-10-4
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PEG3-methylamine is a polyethylene glycol-based amine building block designed to serve as a flexible, hydrophilic linker element in PROTAC architectures. Its ether-rich chain can enhance solubility and provide conformational adaptability between the target-binding ligand and the E3 ligase-recruiting moiety. The terminal amine enables controlled conjugation strategies, supporting modular PROTAC synthesis.
Structure: PEG3-methylamine comprises a short polyethylene glycol segment featuring multiple ether linkages and a terminal primary amine. The molecule is characterized by a flexible, hydrogen-bonding ether environment and an amine functional group capable of forming stable amide or urea linkages after activation.
Reactivity: The terminal primary amine is suitable for standard amide-forming coupling or related nucleophilic acyl substitution steps used in PROTAC construction. Common approaches include reacting the amine with activated carboxylic acids or activated esters under base-mediated conditions, typically in polar organic solvents. Mechanistically, nucleophilic attack by the amine on the activated carbonyl yields the desired amide (or related linkage), with coupling agents or acid-activation reagents often required to drive conversion.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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