m-PEG3-NHS ester is a heterobifunctional polyethylene glycol linker featuring a short, three-unit PEG chain terminated with an N-hydroxysuccinimide (NHS) ester. The PEG segment provides aqueous solubility and reduces nonspecific protein adsorption, while the NHS ester serves as a reactive acylating handle for forming stable amide bonds with primary amines on targeting ligands or protein-reactive moieties. In PROTAC and related targeted degradation workflows, this linker can be used to conjugate an amine-bearing ligand (e.g., a binding warhead derived from a small-molecule binder) to a second component such as an E3-recruiting module, thereby tuning spatial separation and flexibility between the two binding surfaces. Its short PEG length helps maintain productive ternary-complex formation while minimizing excessive linker length that can impair degradation efficiency. Overall, m-PEG3-NHS ester is a practical reagent for constructing well-defined conjugates for systematic structure–activity studies in targeted protein degradation research.
Structure of 876746-59-7
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m-PEG3-NHS ester is a polyethylene glycol (PEG)-based linker designed for efficient conjugation in PROTAC workflows, enabling controlled spatial separation between targeting ligands and E3-recruiting moieties. Its NHS-activated ester functionality supports rapid amide-bond formation under mild aqueous conditions, facilitating streamlined linker installation and improving synthetic flexibility. The detailed Structure and Reactivity characteristics are provided below for researchers planning targeted protein degradation constructs.
Structure: The linker comprises a PEG chain terminated with an N-hydroxysuccinimide ester, providing an activated carboxylate equivalent for nucleophilic acyl substitution. It contains ether linkages within the PEG backbone and an NHS leaving group, yielding a hydrophilic, flexible, and water-compatible conjugation handle.
Reactivity: The NHS ester reacts with primary amines to form stable amide bonds via acyl substitution, typically performed in buffered aqueous or mixed solvent systems at conditions that preserve NHS reactivity. Common nucleophiles include lysine-containing ligands or amine-functionalized intermediates. No special catalysts are required; reaction rates depend on pH and amine nucleophilicity, while NHS hydrolysis can compete, so fresh solutions and controlled residence time are important.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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