m-PEG4-(CH2)6-Phosphonic acid is a heterobifunctional PEG-based linker featuring a phenyl core, a four-unit polyethylene glycol segment, a flexible six-methylene spacer, and a terminal phosphonic acid group. The PEG chain provides aqueous solubility and reduces nonspecific interactions, while the (CH2)6 spacer offers conformational freedom to position the phosphonate-bearing terminus away from the bulky PEG/aryl region. In PROTAC and targeted degradation workflows, the phosphonic acid functionality is commonly used as a strong, metal-coordinating or surface-/receptor-binding anchor, enabling controlled conjugation or immobilization strategies when paired with appropriate ligands or handles. The combination of a hydrophilic PEG segment with a flexible alkyl spacer supports efficient presentation of the attachment point, which can improve the productive geometry for ternary complex formation. This linker is therefore valuable for constructing degraders, affinity probes, and related degradomics tools where stable anchoring and tunable linker length are critical.
Structure of 2028281-85-6
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m-PEG4-(CH2)6-Phosphonic acid is a versatile linker building block designed to support targeted protein degradation (PROTAC) workflows by providing a hydrophilic PEG segment and a flexible aliphatic tether that can be tuned for productive ternary complex formation. Its phosphonic acid functionality enables robust chemical handle(s) for conjugation strategies commonly used to assemble PROTAC constructs. The detailed structural and reactivity considerations below describe how this linker’s features can be leveraged during PROTAC synthesis and characterization.
Structure: The linker contains a PEG-derived polyether chain and a saturated hexamethylene spacer that impart conformational flexibility and aqueous compatibility. A phosphonic acid group provides a strongly polar, hydrogen-bonding functionality, while aromatic substitution patterns contribute defined aromatic character and stable covalent connectivity.
Reactivity: Phosphonic acids can participate in coupling and derivatization routes such as activation to form reactive phosphorus intermediates for amide- or ester-type bond formation, or for attachment to complementary functional groups on ligands used in PROTACs. Typical conditions employ dry, inert or controlled aqueous/organic solvent systems, with base and dehydrating or activating reagents chosen to minimize phosphonate hydrolysis and preserve linker integrity.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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