SJF620

 CAS No.: 2376187-16-3  Cat No.: BP-400113  Purity: ≥98% 4.5  

SJF620 is a cereblon-recruiting PROTAC that targets Bruton's tyrosine kinase for degradation. Public sources describe it as a BTK degrader containing a BTK ligand connected to a lenalidomide-analog cereblon recruiter. The BTK-recognition element provides kinase targeting, while the cereblon-binding element recruits the E3 ligase complex; the linker positions both proteins for productive ternary-complex formation. Mechanistically, SJF620 promotes BTK ubiquitination followed by proteasomal degradation, enabling depletion of BTK protein rather than reversible inhibition of kinase activity alone. It is valuable for studying BTK-dependent signaling in B-cell models, comparing degradation with covalent or reversible BTK inhibition, evaluating cereblon-based degrader design, and probing how BTK removal affects downstream immune-receptor signaling, resistance mechanisms, and target residence versus degradation pharmacology.

SJF620

Structure of 2376187-16-3

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PROTAC
Molecular Formula
C41H44N8O7
Molecular Weight
760.84
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<a href="/product/sjf620-hydrochloride-cas-2821938-05-8-380232.html">2821938-05-8</a> (hydrochloride)

* For research and manufacturing use only. Not for human or clinical use.

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Purity
≥98%
Solubility
Soluble in DMSO
Storage
Store at -20°C
IUPACName
3-[6-[2-[2-[2-[4-[4-amino-3-(4-phenoxyphenyl)pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl]ethoxy]ethoxy]ethoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione
Synonyms
3-(5-{2-[2-(2-{4-[4-Amino-3-(4-phenoxyphenyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]-1-piperidinyl}ethoxy)ethoxy]ethoxy}-1-oxo-1,3-dihydro-2H-isoindol-2-yl)-2,6-piperidinedione; 2,6-Piperidinedione, 3-[5-[2-[2-[2-[4-[4-amino-3-(4-phenoxyphenyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]-1-piperidinyl]ethoxy]ethoxy]ethoxy]-1,3-dihydro-1-oxo-2H-isoindol-2-yl]-
Boiling Point
988.1±65.0°C at 760 mmHg
Density
1.4±0.1 g/cm3
InChI Key
UJJYPBWMGIPXOE-UHFFFAOYSA-N
InChI
InChI=1S/C41H44N8O7/c42-38-36-37(27-6-8-31(9-7-27)56-30-4-2-1-3-5-30)46-49(39(36)44-26-43-38)29-14-16-47(17-15-29)18-19-53-20-21-54-22-23-55-32-10-11-33-28(24-32)25-48(41(33)52)34-12-13-35(50)45-40(34)51/h1-11,24,26,29,34H,12-23,25H2,(H2,42,43,44)(H,45,50,51)
SMILES
C1CC(=O)NC(=O)C1N2CC3=C(C2=O)C=CC(=C3)OCCOCCOCCN4CCC(CC4)N5C6=NC=NC(=C6C(=N5)C7=CC=C(C=C7)OC8=CC=CC=C8)N
Mechanism

Target: SJF620 selectively targets Bruton’s tyrosine kinase for cereblon-mediated degradation.

Binding site: Its BTK ligand binds the ATP-binding catalytic pocket of BTK.

Mechanism of action: SJF620 is a potent CRBN-recruiting BTK PROTAC that links a BTK-binding ligand to a lenalidomide-derived cereblon recruiter. By simultaneously engaging BTK and CRL4CRBN, SJF620 drives ternary-complex formation, BTK ubiquitination, and proteasome-dependent degradation. This event-driven mechanism enables depletion of BTK protein rather than transient inhibition of its catalytic activity. In research studies, SJF620 supports analysis of B-cell receptor signaling, BTK protein dependency, degradation kinetics, downstream pathway suppression, and comparison of degradation-based BTK modulation with conventional covalent or reversible kinase inhibition.

Applications

• PROTAC-Mediated Kinase Degradation: SJF620 serves as a powerful tool for the targeted degradation of kinases, offering researchers a novel approach to dissect kinase signaling pathways. By leveraging the PROTAC mechanism, SJF620 facilitates the precise removal of specific kinases, enhancing the study of their biological roles and potential as therapeutic targets.

• Targeted Protein Degradation in Cancer Research: SJF620 is utilized in cancer research to selectively degrade oncogenic proteins. This approach allows scientists to investigate the effects of protein depletion on cancer cell viability and proliferation, providing insights into potential vulnerabilities that can be exploited for therapeutic intervention.

• Elucidation of Protein Function via PROTACs: Researchers employ SJF620 to study protein function by inducing targeted protein degradation. This method enables the exploration of protein roles in various cellular processes, facilitating the identification of critical proteins involved in disease mechanisms and offering a pathway to novel drug discovery.

• PROTAC-Based Drug Discovery: SJF620 is instrumental in drug discovery efforts focused on targeted protein degradation. By enabling the selective elimination of disease-associated proteins, it aids in the identification and validation of new drug targets, accelerating the development of innovative therapeutic strategies.

1. Design, synthesis and biological evaluation of Proteolysis Targeting Chimeras (PROTACs) as a BTK degraders with improved pharmacokinetic properties
Alexandru D Buhimschi, Craig M Crews, Momar Toure, John Hines, Saul Jaime-Figueroa Bioorg Med Chem Lett . 2020 Feb 1;30(3):126877. doi: 10.1016/j.bmcl.2019.126877.
A new series of Proteolysis Targeting Chimeras (PROTACs) targeting Bruton's Tyrosine Kinase (BTK) was synthesized, with the goal of improving the pharmacokinetic properties of our previously reported PROTAC, MT802. We recently described the ability of MT802 to induce degradation of both wild-type and C481S mutant BTK in immortalized cells and patient-derived B-lymphocytes. However, the pharmacokinetic properties of MT802 were not suitable for further in vivo development. Therefore, we undertook a systematic medicinal chemistry campaign to overcome this issue and made a series of PROTACs with structural modifications to the linker and E3-recruiting ligand; more specifically, the new PROTACs were synthesized with different von Hippel-Lindau (VHL) and cereblon (CRBN) ligands while keeping the BTK ligand and linker length constant. This approach resulted in an equally potent PROTAC, SJF620, with a significantly better pharmacokinetic profile than MT802. This compound may hold promise for further in vivo exploration of BTK degradation.

I am curious about its application, could you tell me? thanks.

Potential applications: B-cell malignancies: SJF620 is primarily being investigated for treating B-cell malignancies such as chronic lymphocytic leukemia (CLL), mantle cell lymphoma, and Waldenström's macroglobulinemia. Its potent and selective BTK degradation potential makes it a promising candidate for these diseases. Other B-cell related disorders: Research is also exploring its potential in autoimmune diseases where B-cell activity is involved, such as rheumatoid arthritis and inflammatory bowel disease.

23/3/2016

Does it belongs to Btk degrader?

Yes, it is. It features two ligands: one targeting Cereblon, an E3 ubiquitin ligase protein that tags proteins for degradation by the UPS, and the other targeting Bruton's tyrosine kinase (BTK), a protein involved in B-cell signaling pathways.

20/7/2017

Could you explain to me its Potent and selective? thanks.

SJF620 shows high potency in degrading BTK, with a DC50 of 7.9 nM in cellular assays. This indicates its effectiveness at even low concentrations. Additionally, it exhibits good selectivity for BTK compared to other proteins.

8/7/2021

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* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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