Sulfosuccinimidyl-2-(m-azido-o-nitrobenzamido)-ethyl-1,3'-proprionate
Sulfosuccinimidyl-2-(m-azido-o-nitrobenzamido)-ethyl-1,3'-proprionate is a heterobifunctional, amine-reactive PROTAC linker reagent designed to couple a primary amine–containing targeting ligand to a complementary azide-bearing handle for subsequent conjugation. Structurally, it incorporates an NHS sulfonate ester for efficient formation of stable amide bonds with lysine or N-terminus groups, alongside an azido-nitrobenzamide motif that provides a chemically addressable azide functionality and an aromatic amide region that can be used to tune linker polarity and spacing. In PROTAC workflows, this type of linker serves as an intermediate that mediates controlled attachment between the “warhead” ligand and the partner module, enabling modular assembly and facilitating downstream click or azide-reactive coupling strategies. Its value for targeted protein degradation research lies in providing a practical route to generate well-defined conjugates, supporting systematic variation of attachment chemistry and linker geometry to optimize ternary complex formation and degradation efficiency.
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* For research and manufacturing use only. Not for human or clinical use.
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This PROTAC linker reagent is designed to enable efficient conjugation between targeting ligands and protein-recruiting modules through robust amide-forming chemistry and a built-in azide handle for subsequent bioorthogonal functionalization. Its electrophilic sulfosuccinimidyl ester supports rapid coupling under aqueous-compatible conditions, while the azido-nitrobenzamide motif facilitates downstream attachment strategies commonly used in targeted protein degradation workflows. The sections below describe its structure and practical reactivity considerations for constructing PROTACs.
Structure: The molecule contains a sulfosuccinimidyl ester for nucleophile-driven acyl substitution, an ethyl spacer, and a nitrobenzamide bearing an azide substituent. It features amide and ester linkages, aromatic ring systems, and a sulfonate-derived solubilizing group that promotes aqueous compatibility.
Reactivity: Coupling typically proceeds via aminolysis of the sulfosuccinimidyl ester with primary amines or suitably activated nucleophiles to form stable amide bonds. Reaction conditions are generally mild and aqueous-buffered, often using controlled pH to maintain nucleophile reactivity while limiting hydrolysis. The azide group is suitable for later click-type conjugations, enabling modular assembly of PROTAC constructs through orthogonal chemistries without interfering with the formed amide linkage.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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