2-(Azido-PEG2-amido)-1,3-propandiol
2-(Azido-PEG2-amido)-1,3-propandiol is an azide-functional, PEG-based linker building block featuring a short, flexible polyethylene glycol spacer bearing a terminal azide and a 1,3-diol, with an internal amide linkage. Structurally, it provides a hydrophilic, conformationally mobile segment that can reduce steric constraints and improve productive geometry between a target-binding ligand and an E3 ligase recruiter when incorporated into a conjugate. The azide group enables efficient bioorthogonal conjugation via copper-catalyzed or strain-promoted azide–alkyne cycloaddition, allowing researchers to attach this linker to complementary alkyne-bearing partners under conditions compatible with many organic ligands. In targeted protein degradation research, this linker is valuable for systematically tuning linker length, polarity, and attachment chemistry to optimize ternary complex formation and degradation potency. The azide supports click conjugation, while the two hydroxyl groups can be derivatized after suitable activation; the internal amide remains a stable linkage. This modularity supports rapid synthesis and comparative studies across PROTAC architectures.
Structure of 1398044-52-4
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This PROTAC linker, 2-(Azido-PEG2-amido)-1,3-propandiol, is designed to provide a hydrophilic, flexible spacer that can be incorporated into targeted protein degradation constructs. Its azide functionality enables efficient bioorthogonal conjugation, while the PEG-containing amide framework supports favorable solubility and linker presentation between binding elements. The following sections describe its structural features and practical reactivity considerations for PROTAC assembly.
Structure: The linker contains an azide group for orthogonal click-type coupling, a PEG-derived ether segment for hydrophilicity, and an amide linkage that can participate in hydrogen bonding. A 1,3-propandiol motif provides additional hydroxyl functionality, with stable carbon–nitrogen and carbon–oxygen bonds defining its conformational flexibility.
Reactivity: The azide group is suitable for copper-free or copper-catalyzed azide–alkyne cycloaddition to connect PROTAC warheads or ligands bearing complementary alkynes. Conjugation is typically performed under mild conditions compatible with common organic functional groups, using appropriate catalysts and polar solvents to maintain solubility. The reaction proceeds via formation of a triazole linkage, enabling modular assembly of degradation scaffolds without perturbing the PEG/amide spacer integrity.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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