3,6,9,12,15,18,21,24-Octaoxaheptacos-26-yn-1-ol
3,6,9,12,15,18,21,24-Octaoxaheptacos-26-yn-1-ol is a long, polyether-based PROTAC linker featuring eight ether oxygens distributed along a heptacosyl backbone and a terminal propargyl alcohol functionality. The extended, flexible ethylene-oxide segments provide conformational adaptability and aqueous solubility, while the terminal alkyne and hydroxyl enable orthogonal chemical handling for conjugation strategies commonly used in targeted protein degradation workflows. In PROTAC assembly, such linkers help position the E3-ligand and the target-binding ligand at an appropriate spatial distance and geometry to promote productive ternary complex formation, thereby supporting efficient ubiquitination and subsequent proteasomal degradation. Its tether length and ether-rich character are particularly useful for optimizing linker-dependent activity, including tuning cell permeability and minimizing steric mismatch. Researchers can employ this linker to generate modular PROTAC constructs for systematic structure–activity relationship studies, facilitating rational optimization of degradation potency and selectivity.
Structure of 1351556-81-4
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* For research and manufacturing use only. Not for human or clinical use.
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3,6,9,12,15,18,21,24-Octaoxaheptacos-26-yn-1-ol, is designed to provide a flexible, oxygen-rich spacer that can tune the geometry between a ligand and an E3-recruiting module. Its extended polyether character and terminal alkyne alcohol functionality support modular assembly strategies commonly used in targeted protein degradation workflows. The linker’s physicochemical balance can help maintain productive ternary complex formation, and the subsequent points below describe its structure and practical reactivity considerations in detail.
Structure: The linker contains a long polyether backbone with multiple ether linkages, promoting conformational flexibility and polarity. A terminal propargyl-type alcohol functionality and an internal alkyne provide chemically addressable sites for coupling. Overall, it behaves as a neutral, hydrogen-bonding-capable spacer with ether-rich solvation characteristics.
Reactivity: For PROTAC construction, the terminal alcohol can be converted to activated derivatives (for example, carbonate, ester, or halide forms) under standard coupling conditions, enabling formation of stable ether or ester bonds to ligand handles. The alkyne can participate in bioorthogonal-type conjugations (commonly copper-catalyzed azide–alkyne cycloaddition or related alkyne coupling strategies) using appropriate catalysts and polar aprotic solvents. Reaction design should consider protecting-group compatibility and maintaining linker integrity during coupling steps.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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