Amino-PEG12-amine is a bifunctional polyethylene glycol linker featuring terminal primary amine groups connected by an extended PEG chain. The long, flexible, hydrophilic backbone provides a defined spacer that can reduce steric interference between a ligand warhead and an E3-ligase recruiting moiety, while also improving aqueous solubility and often mitigating nonspecific aggregation. In PROTAC architectures, this linker serves as a conjugation handle that enables covalent attachment of two components through amide or related coupling chemistries, thereby positioning the binding elements to promote productive ternary complex formation. Its chain length and conformational mobility are particularly useful when optimizing linker geometry to balance binding affinity, degradation potency, and cellular permeability, as linker effects are well documented to strongly influence targeted protein degradation outcomes. Researchers value Amino-PEG12-amine for systematic structure–activity relationship studies and for generating modular PROTAC constructs with tunable spatial separation between functional domains.
Structure of 361543-12-6
* For research and manufacturing use only. Not for human or clinical use.
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This Amino-PEG12-amine linker is designed for flexible, water-compatible conjugation in PROTAC architectures, enabling efficient spatial tuning between a ligand-recruiting moiety and an E3 ligase binder. Its poly(ethylene glycol) character supports solubility and reduces nonspecific interactions, while the terminal amines provide versatile handles for covalent assembly. The subsequent points describe the structural features and practical reactivity considerations for constructing PROTACs using this linker.
Structure: Amino-PEG12-amine is a linear poly(ethylene glycol) chain terminated by primary amine groups. The backbone consists of repeating ether linkages, providing conformational flexibility and hydrophilicity. Terminal C–N bonds enable formation of stable amide or urea linkages through nucleophilic acyl substitution or related coupling chemistry.
Reactivity: The two primary amines are suitable for PROTAC linker installation via amide coupling with activated carboxylic acids (for example, using carbodiimide-based systems) or via isocyanate/activated carbonate chemistry to form urea or related conjugates. Reactions are typically performed under anhydrous or controlled-moisture conditions with appropriate base and compatible solvents such as polar aprotic media, while maintaining pH ranges that preserve amine nucleophilicity.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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