Benzyl-PEG9-THP is a bifunctional polyethylene glycol (PEG) linker featuring a benzyl terminus and a terminal tetrahydropyran (THP) ether, connected through an approximately nine-unit PEG chain. The ether-protected THP group provides a chemically addressable handle that can be used to control attachment chemistry during PROTAC assembly, while the PEG segment confers aqueous solubility, conformational flexibility, and reduced steric interference between the two binding partners. In targeted protein degradation constructs, such linkers are used to spatially separate a ligand for an E3 ligase from a ligand for the target protein, promoting productive ternary complex formation and improving the probability of ubiquitination and subsequent proteasomal degradation. This linker format is valuable for researchers optimizing linker length and attachment strategy, enabling systematic tuning of degradation potency and selectivity while maintaining synthetic modularity for conjugation to diverse warheads and recruiting ligands.
Structure of 669556-53-0
* For research and manufacturing use only. Not for human or clinical use.
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Benzyl-PEG9-THP is a polyethylene glycol-based PROTAC linker designed to connect a benzyl handle to a THP (tetrahydropyran) protected functional group through a PEG spacer. Its flexible, hydrophilic architecture supports productive ternary complex formation and improves solubility and handling of conjugates. This linker is well suited for assembling targeted protein degradation constructs, and the following points describe its structure and practical reactivity considerations in PROTAC synthesis.
Structure: The molecule contains a benzyl moiety linked to a PEG chain and a THP-protected group, featuring ether linkages within the PEG backbone and an acetal-type THP functionality. Overall, it is characterized by conformational flexibility, high polarity, and solubility-enhancing ether-rich composition.
Reactivity: THP-protected functionalities are typically introduced or carried through synthesis and then deprotected under mild acidic conditions to reveal a reactive alcohol or related nucleophile for subsequent coupling. For PROTAC assembly, the liberated group can be used in standard esterification or ether-forming reactions with activated carboxylic acid derivatives or electrophiles. Commonly used conditions employ acid catalysts in suitable polar solvents, followed by purification to remove byproducts.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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