Biotin-PEG2-NH-Mal is a heterobifunctional PEG-based linker combining a biotin handle with a maleimide reactive group through a short, two-unit polyethylene glycol spacer. Structurally, it provides a flexible hydrophilic chain that spatially separates the biotin moiety from the electrophilic maleimide, improving accessibility for subsequent conjugation. In PROTAC and targeted degradation workflows, such linkers are used to tether biomolecules or ligands to biotin-binding capture systems (e.g., streptavidin-coated surfaces or proteins) while simultaneously enabling site-selective coupling to thiols via the maleimide–cysteine reaction. This dual functionality supports modular assembly of degradation constructs, including preparation of biotinylated targeting components or recruitment modules that can be immobilized, purified, or formatted for controlled stoichiometry. The PEG spacer helps reduce steric hindrance and nonspecific interactions, facilitating reproducible conjugation and downstream evaluation of degradation efficacy in biochemical and cell-based assays.
Structure of 305372-39-8
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This biotin-functionalized PEG-based linker, Biotin-PEG2-NH-Mal, is designed to connect targeting ligands to PROTAC architectures while providing aqueous compatibility and conformational flexibility. The PEG spacer helps reduce steric constraints and can improve productive engagement of the recruited E3 ligase complex. The terminal maleimide enables chemoselective conjugation to thiol-containing partners, supporting modular PROTAC synthesis. The detailed structural and reactivity characteristics are provided below.
Structure: The linker comprises a biotin moiety tethered through a short polyethylene glycol spacer to a primary amine and a terminal maleimide. It contains amide and ether linkages, a maleimide double bond, and a thio-Michael acceptor functionality. The PEG segment imparts hydrophilicity and flexible chain dynamics.
Reactivity: The maleimide group undergoes thiol–maleimide conjugation via a Michael addition, typically under mildly basic aqueous conditions that preserve maleimide integrity and promote thiol nucleophilicity. Use thiol-containing ligands or intermediates (e.g., cysteine or reduced thiol reagents) and avoid strong reducing agents that can interfere with maleimide electrophilicity. Common conjugation solvents include buffered water or water-organic mixtures, with temperature and pH optimized to balance reaction rate and side reactions.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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