Fmoc-N-amido-PEG4-acetic acid is a polyethylene glycol–based, Fmoc-protected amino acid building block designed for stepwise synthesis of PROTAC linkers. Structurally, it incorporates an Fmoc carbamate for orthogonal solid-phase or solution-phase coupling, an amide linkage that connects the PEG segment to the acetic acid terminus, and a PEG4 chain length that provides a flexible, hydrophilic spacer between functional groups. In PROTAC architectures, such PEG-based linkers help tune the spatial relationship between the target-binding ligand and the E3 ligase recruiter, improving productive ternary complex formation and often reducing non-specific hydrophobic interactions. The terminal acetic acid functionality enables further conjugation or coupling to complementary PROTAC fragments, facilitating modular assembly. This reagent is valuable for researchers optimizing linker length, polarity, and conformational freedom to enhance degradation potency and selectivity in targeted protein degradation studies.
Structure of 437655-95-3
* For research and manufacturing use only. Not for human or clinical use.
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Fmoc-N-amido-PEG4-acetic acid is a polyethylene glycol-based PROTAC linker building block designed to provide conformational flexibility, aqueous compatibility, and controlled spatial separation between targeting and recruiting modules. Its amide functionality supports robust conjugation strategies commonly used in targeted protein degradation workflows, while the Fmoc protecting group enables stepwise synthesis. The product is well suited for researchers preparing modular PROTAC constructs, and the following points describe its structure and practical reactivity considerations in detail below.
Structure: The linker features a PEG chain segment terminating in an acetic acid functionality and an N-amide linkage, combined with an Fmoc-protected nitrogen. It contains aromatic carbamate chemistry (Fmoc), ester-like carboxylic acid reactivity, and multiple ether linkages that enhance hydrophilicity and segmental mobility.
Reactivity: PROTAC assembly typically employs Fmoc deprotection under standard base conditions to reveal the reactive amine, followed by amide-bond formation with activated carboxylic acid derivatives (e.g., NHS esters or activated acids). Coupling can proceed via nucleophilic acyl substitution using common peptide-coupling reagents, with polar organic solvents and controlled pH to preserve PEG integrity and minimize side reactions.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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