FN-1501 is a kinase ligand associated with FLT3 and CDK-family targets, providing a multitarget recognition scaffold for degradation-oriented kinase research. The compound binds kinase catalytic regions and may be adapted into a PROTAC format when a defined target and linker-tolerant attachment vector are established. In a bifunctional degrader, the FN-1501-derived moiety would engage FLT3 or a selected CDK target, while a linker connects it to an E3 ligase recruiter to promote proximity with ubiquitination machinery. The intended outcome is target ubiquitination and proteasome-dependent protein depletion. FN-1501 is useful for FLT3 and CDK degrader exploration, multitarget kinase profiling, cell-cycle and receptor kinase pathway studies, linker optimization, target engagement assays, and evaluation of degradation selectivity from broad kinase-recognition scaffolds.
Structure of 1429515-59-2
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Target: This ligand targets FLT3 and cyclin-dependent kinases CDK2, CDK4, and CDK6 in biochemical or cellular target-engagement studies.
Mechanism of Action: Used as the target-protein recognition element, this ligand provides the binding interface for FLT3 and cyclin-dependent kinases CDK2, CDK4, and CDK6. In PROTAC design, a derivatizable position on the ligand can be connected through an optimized linker to an E3 ligase ligand, such as a CRBN, VHL, or IAP recruiter, while preserving productive target engagement. The resulting bifunctional molecule brings FLT3 into proximity with the recruited E3 ligase, enabling ternary-complex formation. If the complex has favorable geometry and residence time, target lysine ubiquitination is promoted, leading to proteasome-dependent degradation in experimental systems.
Applications• PROTAC-Mediated Target Degradation: FN-1501 can be used as a ligand component in PROTAC constructs to recruit an E3 ubiquitin ligase and drive ubiquitination of the target protein. This enables systematic evaluation of degradation potency, kinetics, and dose-response behavior in cellular models, supporting mechanism-of-action studies and optimization of chimeric design.
• E3 Ligase Recruitment Optimization: FN-1501 may serve as a starting ligand to explore how ligand chemistry influences ternary complex formation and productive ubiquitin transfer. Researchers can vary linker length, attachment points, and PROTAC architecture to maximize target engagement and degradation efficiency, while minimizing off-target ubiquitination and non-specific proteome stress.
• Structure–Activity Relationship Studies: FN-1501-derived PROTACs are suitable for structure–activity relationship (SAR) investigations. By systematically modifying the ligand and its conjugation geometry, teams can map how binding affinity, cooperativity, and residence time correlate with degradation outcomes, including changes in target half-life and accumulation of ubiquitinated intermediates.
• Pathway and Phenotypic Validation: FN-1501-based PROTACs can be applied to validate target dependency in signaling and functional assays. Following degradation induction, investigators can quantify downstream pathway modulation, cell-cycle or apoptosis markers, and rescue experiments to confirm that observed phenotypes arise from targeted protein loss rather than transient inhibition.
Structure: The structure of FN-1501 is characterized by primary or secondary amine/basic nitrogen centers; amide/urea/sulfonamide hydrogen-bonding motifs; heteroaromatic protein-recognition scaffold. These features provide defined hydrogen-bonding, hydrophobic, and steric elements that can support affinity retention while enabling analogue-based linker-vector selection.
Reactivity: The amine/basic nitrogen-containing motif can be evaluated for acylation, sulfonylation, alkylation, or carbamate/urea linker installation when that vector is solvent exposed. For PROTAC construction, the POI ligand can be paired with CRBN ligands such as thalidomide, pomalidomide, or lenalidomide analogues, VHL ligands such as VH032 derivatives, or less common IAP/MDM2/cIAP-recruiting ligands, with alkyl, PEG, piperazine, triazole, or amide linkers screened for ternary-complex formation. In practice, incorporation into PROTACs should begin from derivatives that preserve the reported binding pharmacophore, followed by systematic variation of linker length, polarity, rigidity, and exit-vector geometry to optimize target engagement, E3 recruitment, and cellular degradation readouts.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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