FN-1501

 CAS No.: 1429515-59-2  Cat No.: BP-300088  Purity: ≥98% 4.5  

FN-1501 is a kinase ligand associated with FLT3 and CDK-family targets, providing a multitarget recognition scaffold for degradation-oriented kinase research. The compound binds kinase catalytic regions and may be adapted into a PROTAC format when a defined target and linker-tolerant attachment vector are established. In a bifunctional degrader, the FN-1501-derived moiety would engage FLT3 or a selected CDK target, while a linker connects it to an E3 ligase recruiter to promote proximity with ubiquitination machinery. The intended outcome is target ubiquitination and proteasome-dependent protein depletion. FN-1501 is useful for FLT3 and CDK degrader exploration, multitarget kinase profiling, cell-cycle and receptor kinase pathway studies, linker optimization, target engagement assays, and evaluation of degradation selectivity from broad kinase-recognition scaffolds.

FN-1501

Structure of 1429515-59-2

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Ligand for Target Protein
Molecular Formula
C22H25N9O
Molecular Weight
431.49
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Powder

* For research and manufacturing use only. Not for human or clinical use.

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Purity
≥98%
Solubility
Soluble in DMSO
Appearance
Powder
Storage
Store at -20°C
IUPACName
N-[4-[(4-methylpiperazin-1-yl)methyl]phenyl]-4-(7H-pyrrolo[2,3-d]pyrimidin-4-ylamino)-1H-pyrazole-5-carboxamide
Synonyms
4-((7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino)-N-(4-((4-methylpiperazin-1-yl)methyl)phenyl)-1H-pyrazole-5-carboxamide; 1H-Pyrazole-3-carboxamide, N-[4-[(4-methyl-1-piperazinyl)methyl]phenyl]-4-(7H-pyrrolo[2,3-d]pyrimidin-4-ylamino)-; N-{4-[(4-Methyl-1-piperazinyl)methyl]phenyl}-4-(7H-pyrrolo[2,3-d]pyrimidin-4-ylamino)-1H-pyrazole-3-carboxamide
Boiling Point
644.3±55.0°C at 760 mmHg
Density
1.4±0.1 g/cm3
InChI Key
VXLAKHWYGRKCGI-UHFFFAOYSA-N
InChI
InChI=1S/C22H25N9O/c1-30-8-10-31(11-9-30)13-15-2-4-16(5-3-15)27-22(32)19-18(12-26-29-19)28-21-17-6-7-23-20(17)24-14-25-21/h2-7,12,14H,8-11,13H2,1H3,(H,26,29)(H,27,32)(H2,23,24,25,28)
SMILES
CN1CCN(CC1)CC2=CC=C(C=C2)NC(=O)C3=C(C=NN3)NC4=NC=NC5=C4C=CN5
Mechanism

Target: This ligand targets FLT3 and cyclin-dependent kinases CDK2, CDK4, and CDK6 in biochemical or cellular target-engagement studies.

Mechanism of Action: Used as the target-protein recognition element, this ligand provides the binding interface for FLT3 and cyclin-dependent kinases CDK2, CDK4, and CDK6. In PROTAC design, a derivatizable position on the ligand can be connected through an optimized linker to an E3 ligase ligand, such as a CRBN, VHL, or IAP recruiter, while preserving productive target engagement. The resulting bifunctional molecule brings FLT3 into proximity with the recruited E3 ligase, enabling ternary-complex formation. If the complex has favorable geometry and residence time, target lysine ubiquitination is promoted, leading to proteasome-dependent degradation in experimental systems.

Applications

• PROTAC-Mediated Target Degradation: FN-1501 can be used as a ligand component in PROTAC constructs to recruit an E3 ubiquitin ligase and drive ubiquitination of the target protein. This enables systematic evaluation of degradation potency, kinetics, and dose-response behavior in cellular models, supporting mechanism-of-action studies and optimization of chimeric design.

• E3 Ligase Recruitment Optimization: FN-1501 may serve as a starting ligand to explore how ligand chemistry influences ternary complex formation and productive ubiquitin transfer. Researchers can vary linker length, attachment points, and PROTAC architecture to maximize target engagement and degradation efficiency, while minimizing off-target ubiquitination and non-specific proteome stress.

• Structure–Activity Relationship Studies: FN-1501-derived PROTACs are suitable for structure–activity relationship (SAR) investigations. By systematically modifying the ligand and its conjugation geometry, teams can map how binding affinity, cooperativity, and residence time correlate with degradation outcomes, including changes in target half-life and accumulation of ubiquitinated intermediates.

• Pathway and Phenotypic Validation: FN-1501-based PROTACs can be applied to validate target dependency in signaling and functional assays. Following degradation induction, investigators can quantify downstream pathway modulation, cell-cycle or apoptosis markers, and rescue experiments to confirm that observed phenotypes arise from targeted protein loss rather than transient inhibition.

1. CRMP2 is a therapeutic target that suppresses the aggressiveness of breast cancer cells by stabilizing RECK
Tiepeng Wang, Binyan Lin, Zhenzhong Chen, Yangmin Qiu, Kai Zhao, Na Lu, Yongxu Li Oncogene . 2020 Sep;39(37):6024-6040. doi: 10.1038/s41388-020-01412-x.
Metastatic breast cancer is characterized by high mortality and limited therapeutic target. During tumor metastasis, cytoskeletal reorganization is one of the key steps in the migration and invasion of breast cancer cells. Collapsin response mediator protein 2 (CRMP2) is a cytosolic phosphoprotein that plays an important role in regulating cytoskeletal dynamics. Previous researches have reported that altered CRMP2 expression is associated with breast cancer progression, but the underlying mechanism remains poorly understood. Here, we show that CRMP2 expression is reduced in various subtypes of breast cancers and negatively correlated with lymphatic metastasis. Overexpression of CRMP2 significantly inhibits invasion and stemness in breast cancer cells, while downregulation of CRMP2 promotes cell invasion, which is not required for tubulin polymerization. Mechanistic studies demonstrate that CRMP2 interacts with RECK, prevents RECK degradation, which, in turn, blocks NF-κB and Wnt signaling pathways. Furthermore, we find that phosphorylation of CRMP2 at T514 and S522 remarkably abolishes its functions to bind with RECK and to inhibit cell invasion. Pharmacologic rescue of CRMP2 expression suppressed breast cancer metastasis in vitro and in vivo and stimulated a synergetic effect with FN-1501 that induces CRMP2 dephosphorylation. Collectively, this study highlights the potential of CRMP2 as a therapeutic target in breast cancer metastasis and reveals a distinct mechanism of CRMP2.
2. Design and Synthesis of 4-(Heterocyclic Substituted Amino)-1 H-Pyrazole-3-Carboxamide Derivatives and Their Potent Activity against Acute Myeloid Leukemia (AML)
Tao Lu, Hao Heng, Shuai Lu, Chao Yao, Yue Wang, Li Xiang, Jiongheng Cai, Yanle Zhi, Zhijie Wang, Baoquan Li Int J Mol Sci . 2019 Nov 15;20(22):5739. doi: 10.3390/ijms20225739.
Fms-like receptor tyrosine kinase 3 (FLT3) has been emerging as an attractive target for the treatment of acute myeloid leukemia (AML). By modifying the structure of FN-1501, a potent FLT3 inhibitor, 24 novel 1H-pyrazole-3-carboxamide derivatives were designed and synthesized. Compound8tshowed strong activity against FLT3 (IC50: 0.089 nM) and CDK2/4 (IC50: 0.719/0.770 nM), which is more efficient than FN-1501(FLT3, IC50: 2.33 nM; CDK2/4, IC50: 1.02/0.39 nM). Compound8talso showed excellent inhibitory activity against a variety of FLT3 mutants (IC50< 5 nM), and potent anti-proliferative effect within the nanomolar range on acute myeloid leukemia (MV4-11, IC50: 1.22 nM). In addition, compound8tsignificantly inhibited the proliferation of most human cell lines of NCI60 (GI50< 1 μM for most cell lines). Taken together, these results demonstrated the potential of8tas a novel compound for further development into a kinase inhibitor applied in cancer therapeutics.
3. Discovery of 4-((7H-Pyrrolo[2,3-d]pyrimidin-4-yl)amino)-N-(4-((4-methylpiperazin-1-yl)methyl)phenyl)-1H-pyrazole-3-carboxamide (FN-1501), an FLT3- and CDK-Kinase Inhibitor with Potentially High Efficiency against Acute Myelocytic Leukemia
Zhanwei Wang, Jun Ling, Tao Lu, Shuai Lu, Yue Wang, Chao Yao, Qiaomei Jin, Guowu Lin, Taotao Yang, Tonghui Li, Yanle Zhi, Li Zhang, Haoliang Yuan, Jianlin Jin, Yadong Chen, Hao Guo, Baoquan Li J Med Chem . 2018 Feb 22;61(4):1499-1518. doi: 10.1021/acs.jmedchem.7b01261.
A series of 1-H-pyrazole-3-carboxamide derivatives have been designed and synthesized that exhibit excellent FLT3 and CDK inhibition and antiproliferative activities. A structure-activity-relationship study illustrates that the incorporation of a pyrimidine-fused heterocycle at position 4 of the pyrazole is critical for FLT3 and CDK inhibition. Compound 50 (FN-1501), which possesses potent inhibitory activities against FLT3, CDK2, CDK4, and CDK6 with IC50values in the nanomolar range, shows antiproliferative activities against MV4-11 cells (IC50: 0.008 μM), which correlates with the suppression of retinoblastoma phosphorylation, FLT3, ERK, AKT, and STAT5 and the onset of apoptosis. Acute-toxicity studies in mice show that compound 50 (LD50: 186 mg/kg) is safer than AT7519 (32 mg/kg). In MV4-11 xenografts in a nude-mouse model, compound 50 can induce tumor regression at the dose of 15 mg/kg, which is more efficient than cytarabine (50 mg/kg). Taken together, these results demonstrate the potential of this unique compound for further development into a drug applied in acute-myeloid-leukemia (AML) therapeutics.

Structure: The structure of FN-1501 is characterized by primary or secondary amine/basic nitrogen centers; amide/urea/sulfonamide hydrogen-bonding motifs; heteroaromatic protein-recognition scaffold. These features provide defined hydrogen-bonding, hydrophobic, and steric elements that can support affinity retention while enabling analogue-based linker-vector selection.

Reactivity: The amine/basic nitrogen-containing motif can be evaluated for acylation, sulfonylation, alkylation, or carbamate/urea linker installation when that vector is solvent exposed. For PROTAC construction, the POI ligand can be paired with CRBN ligands such as thalidomide, pomalidomide, or lenalidomide analogues, VHL ligands such as VH032 derivatives, or less common IAP/MDM2/cIAP-recruiting ligands, with alkyl, PEG, piperazine, triazole, or amide linkers screened for ternary-complex formation. In practice, incorporation into PROTACs should begin from derivatives that preserve the reported binding pharmacophore, followed by systematic variation of linker length, polarity, rigidity, and exit-vector geometry to optimize target engagement, E3 recruitment, and cellular degradation readouts.

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* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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