NH-bis(m-PEG8)
NH-bis(m-PEG8) is a branched polyethylene glycol (PEG) scaffold with a central secondary amine and two methoxy-capped PEG8 arms. Structurally, it comprises two PEG8 arms attached to a central nitrogen, providing a flexible, hydrophilic spacer that provides a single central amine that can be acylated or alkylated, while the two mPEG8 termini are nonreactive methoxy caps while maintaining solubility and reducing non-specific hydrophobic interactions. In PROTAC design, such PEG-based linkers help position the two binding modules (typically a ligand for an E3 ligase and a ligand for the target protein) at an appropriate distance and relative orientation, thereby improving the probability of productive ternary complex formation and stabilizing the overall conjugate in aqueous media. As a branched PEG scaffold, NH-bis(m-PEG8) is valuable for systematic linker optimization, including tuning linker length and flexibility to balance binding, cellular uptake, and degradation potency in targeted protein degradation research.
Structure of 2055013-64-2
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This PROTAC linker, NH-bis(m-PEG8), is designed to provide a flexible, hydrophilic polyethylene glycol–based spacer that can connect a ligand for an E3 ligase to a target-binding moiety. Its ether-rich architecture supports favorable solubility and conformational adaptability, which are often important for efficient ternary complex formation and targeted protein degradation. The structure and reactivity considerations for PROTAC assembly are described in detail below.
Structure: NH-bis(m-PEG8) comprises a central secondary amine linked to two methoxy-terminated polyethylene glycol chains, creating an ether-dominant, highly solvated scaffold. The linker contains multiple C–O ether bonds, flexible C–C/C–N connections, and a central N–H group, yielding pronounced hydrophilicity and conformational flexibility.
Reactivity: For PROTAC construction, the linker is typically employed through amine-reactive or amide-forming coupling strategies, depending on the functional groups presented on the ligands. Suitable approaches include carbodiimide-mediated amide bond formation or nucleophilic substitution/condensation where compatible leaving groups are available. Reactions are commonly performed under inert or controlled atmospheres in polar aprotic or aqueous-organic solvents, with base or coupling reagents selected to preserve PEG integrity and minimize side reactions.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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