NH-bis(m-PEG8)

 CAS No.: 2055013-64-2  Cat No.: BP-501183 4.5  

NH-bis(m-PEG8) is a branched polyethylene glycol (PEG) scaffold with a central secondary amine and two methoxy-capped PEG8 arms. Structurally, it comprises two PEG8 arms attached to a central nitrogen, providing a flexible, hydrophilic spacer that provides a single central amine that can be acylated or alkylated, while the two mPEG8 termini are nonreactive methoxy caps while maintaining solubility and reducing non-specific hydrophobic interactions. In PROTAC design, such PEG-based linkers help position the two binding modules (typically a ligand for an E3 ligase and a ligand for the target protein) at an appropriate distance and relative orientation, thereby improving the probability of productive ternary complex formation and stabilizing the overall conjugate in aqueous media. As a branched PEG scaffold, NH-bis(m-PEG8) is valuable for systematic linker optimization, including tuning linker length and flexibility to balance binding, cellular uptake, and degradation potency in targeted protein degradation research.

NH-bis(m-PEG8)

Structure of 2055013-64-2

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PROTAC Linker
Molecular Formula
C₃₄H₇₁NO₁₆
Molecular Weight
749.92

* For research and manufacturing use only. Not for human or clinical use.

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Please store the product under the recommended conditions in the Certificate of Analysis.
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IUPACName
2-[2-[2-[2-[2-[2-[2-(2-methoxyethoxy)ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]-N-[2-[2-[2-[2-[2-[2-[2-(2-methoxyethoxy)ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethyl]ethanamine
InChI Key
MNMWPNXARNOFIU-UHFFFAOYSA-N
InChI
InChI=1S/C34H71NO16/c1-36-7-9-40-15-17-44-23-25-48-31-33-50-29-27-46-21-19-42-13-11-38-5-3-35-4-6-39-12-14-43-20-22-47-28-30-51-34-32-49-26-24-45-18-16-41-10-8-37-2/h35H,3-34H2,1-2H3
SMILES
COCCOCCOCCOCCOCCOCCOCCOCCNCCOCCOCCOCCOCCOCCOCCOCCOC
1. Separation, determination and identification of the diastereoisomers of podophyllotoxin and its esters by high-performance liquid chromatography/tandem mass spectrometry
Lei Zhao, Xuan Tian, Peng-Cheng Fan, Yun-Jing Zhan, Da-Wei Shen, Yan Jin J Chromatogr A. 2008 Nov 14;1210(2):168-77.doi: 10.1016/j.chroma.2008.09.057.Epub 2008 Sep 20.
A rapid and stable high-performance liquid chromatography-diode array detection (HPLC-DAD) and a high-performance liquid chromatography-electrospray ionization tandem mass spectrometry (HPLC-ESI/MS/MS) method were developed and validated for the separation, determination, and identification of eight pairs of diastereoisomers of podophyllotoxin and its esters at C-2 position. The separation was carried out on BDS Hypersil C18 column with CH3OH-CH3CN-H2O as the mobile phase in a gradient program. Interestingly, every 2alpha-H compound migrated before its corresponding 2beta-H epimer under optimum conditions. Also, the [M+NH(4)](+) of all eight pairs of compounds was observed in the HPLC-ESI/MS spectra. The characteristic elimination from the precursor protonated ions and the product ions at m/z 397, 313, 282, and 229 were the common diagnostic masses. The ion ratios of relative abundance [M-ROH+H](+) (ion 397) to [M+NH(4)](+), [A+H](+) (ion 313) to [M-ROH+H](+), and [M-ROH-ArH+H](+) (ion 229) to [M-ROH+H](+) in the ESI/MS/MS spectra of each pair of diastereoisomers of the lignans specifically exhibited a stereochemical effect. Thus, by using identical sample solutions and chromatographic conditions (including the same columns and gradient programs), the combination of DAD and MS/MS data permitted the separation and identification of the eight pairs of diastereoisomers of the podophyllotoxin and its esters in the mixture. The method could be used in rapidly identifying the purity and monitoring of the epimerization of 2-H of podophyllotoxin and its analogues from natural products, chemical reactions, and pharmaceutical metabolism.

This PROTAC linker, NH-bis(m-PEG8), is designed to provide a flexible, hydrophilic polyethylene glycol–based spacer that can connect a ligand for an E3 ligase to a target-binding moiety. Its ether-rich architecture supports favorable solubility and conformational adaptability, which are often important for efficient ternary complex formation and targeted protein degradation. The structure and reactivity considerations for PROTAC assembly are described in detail below.

Structure: NH-bis(m-PEG8) comprises a central secondary amine linked to two methoxy-terminated polyethylene glycol chains, creating an ether-dominant, highly solvated scaffold. The linker contains multiple C–O ether bonds, flexible C–C/C–N connections, and a central N–H group, yielding pronounced hydrophilicity and conformational flexibility.

Reactivity: For PROTAC construction, the linker is typically employed through amine-reactive or amide-forming coupling strategies, depending on the functional groups presented on the ligands. Suitable approaches include carbodiimide-mediated amide bond formation or nucleophilic substitution/condensation where compatible leaving groups are available. Reactions are commonly performed under inert or controlled atmospheres in polar aprotic or aqueous-organic solvents, with base or coupling reagents selected to preserve PEG integrity and minimize side reactions.

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It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O √ c22h30n40 ╳
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