Propargyl-PEG6-NHS ester is a heterobifunctional polyethylene glycol (PEG) linker that combines a terminal propargyl alkyne handle with an N-hydroxysuccinimide (NHS) ester for acylation of primary amines. Structurally, it is a PEG-based chain of moderate length terminated by an NHS group on one end and a propargyl group on the other, providing both aqueous solubility and orthogonal reactivity. In PROTAC and targeted protein degradation workflows, this linker enables modular conjugation: the NHS ester can be used to attach to lysine residues or amine-bearing ligands (e.g., targeting moieties or affinity tags), while the propargyl alkyne can be subsequently functionalized via copper-free or copper-catalyzed azide–alkyne cycloaddition to install a complementary partner such as a second ligand or a reporter handle. Its value lies in facilitating controlled, stepwise assembly of degraders with improved solubility, reduced steric constraints, and tunable linker positioning to support efficient ternary complex formation and degradation assay readouts.
Structure of 2093153-99-0
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Propargyl-PEG6-NHS ester is a PEG-based bifunctional linker designed for efficient conjugation in PROTAC workflows, enabling stable attachment of targeting ligands through amide formation while preserving a terminal alkyne handle for subsequent click-type coupling. Its flexible polyethylene glycol scaffold enhances solubility and reduces steric interference, supporting robust synthesis of modular PROTAC constructs. The detailed Structure and Reactivity parameters are provided below.
Structure: The linker comprises a polyethylene glycol chain terminated with a propargyl group and an N-hydroxysuccinimide ester. It features an NHS-activated carboxylate for amide bond formation and a terminal alkyne for orthogonal bioorthogonal coupling. The ether-rich PEG backbone imparts flexibility and hydrophilicity.
Reactivity: The NHS ester reacts with primary amines under mildly basic aqueous or mixed solvent conditions to form stable amide linkages, typically proceeding via nucleophilic acyl substitution. For PROTAC assembly, the terminal alkyne can be used in copper-catalyzed azide–alkyne cycloaddition or related alkyne coupling strategies, using appropriate catalysts and solvent systems compatible with sensitive ligands.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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