Thiol-C10-amide-PEG8

 CAS No.: 1353948-95-4  Cat No.: BP-500859 4.5  

Thiol-C10-amide-PEG8 is a heterobifunctional PEG-based PROTAC linker featuring a terminal thiol for covalent conjugation and a C10 alkyl spacer connected through an amide to an oligo(ethylene glycol) segment. The PEG8 portion provides aqueous solubility and conformational flexibility, while the C10-amide spacer helps tune the effective distance and relative orientation between the warhead-binding ligand and the E3-recruiting moiety. In PROTAC architectures, the thiol handle enables site-specific attachment to electrophilic partners (e.g., maleimide- or activated ester-functionalized components) or to thiol-reactive intermediates, allowing modular assembly of degraders with controlled linker length. This linker is particularly valuable for optimizing ternary-complex formation and degradation potency by systematically varying hydrophilicity, linker reach, and attachment geometry, thereby improving experimental robustness in targeted protein degradation studies.

Thiol-C10-amide-PEG8

Structure of 1353948-95-4

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PROTAC Linker
Molecular Formula
C₂₇H₅₅NO₉S
Molecular Weight
569.79

* For research and manufacturing use only. Not for human or clinical use.

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IUPACName
N-[2-[2-[2-[2-[2-[2-[2-(2-hydroxyethoxy)ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethyl]-11-sulfanylundecanamide
InChI Key
YSLHYTZEFFDHAM-UHFFFAOYSA-N
InChI
InChI=1S/C27H55NO9S/c29-11-13-32-15-17-34-19-21-36-23-25-37-24-22-35-20-18-33-16-14-31-12-10-28-27(30)9-7-5-3-1-2-4-6-8-26-38/h29,38H,1-26H2,(H,28,30)
SMILES
C(CCCCCS)CCCCC(=O)NCCOCCOCCOCCOCCOCCOCCOCCO

Thiols are widely used in PROTAC linker chemistry to enable efficient, modular assembly of bifunctional degraders that couple a targeting ligand to an E3 ligase binder. Thiol-C10-amide-PEG8 provides a PEG-based, amide-containing tether designed to promote solubility and conformational flexibility, while retaining a reactive thiol handle for subsequent conjugation. The molecule is therefore well suited for constructing PROTACs where controlled linker length and functional-group compatibility are critical;

Structure: The linker features an aliphatic decyl segment connected through an amide linkage to a polyethylene glycol chain, terminating in a thiol functionality. It contains C–C and C–N/C–O amide-related bonds, ether linkages within the PEG domain, and a sulfur–hydrogen group suitable for controlled derivatization.

Reactivity: The terminal thiol can be used for thiol–maleimide or thiol–disulfide exchange strategies, enabling conjugation to complementary electrophiles under mild, aqueous-compatible conditions. Typically, thiol-reactive PROTAC assembly is performed with appropriate buffering to maintain thiol availability, using inert atmosphere or reducing conditions when disulfide intermediates are involved. Solvents such as aqueous mixtures with organic co-solvents are commonly selected to balance solubility and reaction kinetics, with temperature and pH tuned to preserve linker integrity and coupling efficiency.

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* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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